AT3G54200.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plasma membrane 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family | ||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: anchored to plasma membrane, plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Late embryogenesis abundant protein, group 2 (InterPro:IPR004864); BEST Arabidopsis thaliana protein match is: Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (TAIR:AT3G05975.1); Has 631 Blast hits to 630 proteins in 23 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 631; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:+:20065731..20066438 | ||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 25786.00 Da | ||||||||||||||||||||||||||||||||
| IEP (calculated) | 10.48 | ||||||||||||||||||||||||||||||||
| GRAVY (calculated) | 0.11 | ||||||||||||||||||||||||||||||||
| Length | 235 amino acids | ||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MSDFSIKPDD KKEEEKPATA MLPPPKPNAS SMETQSANTG TAKKLRRKRN CKICICFTIL LILLIAIVIV ILAFTLFKPK RPTTTIDSVT VDRLQASVNP 101: LLLKVLLNLT LNVDLSLKNP NRIGFSYDSS SALLNYRGQV IGEAPLPANR IAARKTVPLN ITLTLMADRL LSETQLLSDV MAGVIPLNTF VKVTGKVTVL 201: KIFKIKVQSS SSCDLSISVS DRNVTSQHCK YSTKL |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)