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AT1G11960.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plasma membrane 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:23990937 (2013): plasma membrane
  • PMID:19334764 (2009): plasma membrane
  • PMID:17317660 (2007): plasma membrane
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : ERD (early-responsive to dehydration stress) family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
ERD (early-responsive to dehydration stress) family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF221 (InterPro:IPR003864); BEST Arabidopsis thaliana protein match is: ERD (early-responsive to dehydration stress) family protein (TAIR:AT1G62320.1); Has 1452 Blast hits to 1271 proteins in 185 species: Archae - 0; Bacteria - 4; Metazoa - 184; Fungi - 702; Plants - 435; Viruses - 0; Other Eukaryotes - 127 (source: NCBI BLink).
Protein Annotations
eggNOG:COG5594eggNOG:KOG1134EMBL:AC002131EMBL:CP002684
EMBL:FJ041116EnsemblPlants:AT1G11960EnsemblPlants:AT1G11960.1entrez:837748
ExpressionAtlas:B5TYT3GeneID:837748Genevisible:B5TYT3GO:GO:0005886
GO:GO:0006811GO:GO:0016021Gramene:AT1G11960.1hmmpanther:PTHR13018
hmmpanther:PTHR13018:SF47HOGENOM:HOG000241414InParanoid:B5TYT3InterPro:IPR003864
InterPro:IPR027815InterPro:IPR032880iPTMnet:B5TYT3KEGG:ath:AT1G11960
ncoils:CoilOMA:GWMEEEVPaxDb:B5TYT3Pfam:B5TYT3
Pfam:PF02714Pfam:PF13967Pfam:PF14703PhylomeDB:B5TYT3
PIR:E86254PRIDE:B5TYT3PRO:PR:B5TYT3ProteinModelPortal:B5TYT3
Proteomes:UP000006548RefSeq:NP_172660.5STRING:3702.AT1G11960.1TAIR:AT1G11960
TMHMM:TMhelixUniGene:At.42101UniProt:A0A097NUP7UniProt:B5TYT3
Coordinates (TAIR10) chr1:-:4039871..4043143
Molecular Weight (calculated) 88284.70 Da
IEP (calculated) 9.15
GRAVY (calculated) 0.12
Length 771 amino acids
Sequence (TAIR10)
(BLAST)
001: MATLGDIGVA AAINILTAII FLLAFAILRI QPFNDRVYFP KWYLKGIRSS PLHSGALVSK FVNVNLGSYL RFLNWMPAAL KMPEPELIDH AGLDSAVYLR
101: IYLIGLKIFV PIALLAWSIL VPVNWTSHGL QLAKLRNVTS SDIDKLSISN IENGSDRFWT HLVMAYAFTF WTCYVLMKEY EKVAAMRLAF LQNEQRRPDQ
201: FTVLVRNVPA DPDESISDSV EHFFLVNHPD HYLTHQVVYN ANDLAALVEQ KKSTQNWLDY YQLKYTRNQE HKPRIKTGFL GLWGKKVDAI DHYIAEIEKL
301: NEQIMEERKK VKKDDTSVMP AAFVSFKTRW GAAVSAQTQQ SSDPTEWLTE WAPEAREVFW SNLAIPYVSL TVRRLIMHIA FFFLTFFFMI PIAFVQSLAS
401: IEGIEKNAPF LKSIIENDLF KSVIQGFLPG IVLKLFLIFL PSILMVMSKF EGFVSLSSLE RRAAFRYYIF NLINVFLGSV ITGSAFEQLD SFLKQSAKEI
501: PKTVGVAIPI KATFFITYIM VDGWAGIAGE ILRLKPLIFF HIKNSLLVKT EKDREEAMNP GQINYHATEP RIQLYFLLGL VYAPVTPVLL PFIIIFFALA
601: YLVFRHQIIN VYNQEYESAA RFWPDVHGRI ISALIIAQIL LMGLLSTKGA AQSTPFLLFL PIITFFFHRY CKGRYEPAFL RHPLKEAMVK DTLERAREPN
701: FNLKPYLQKA YIHPVFKDND YEDSRFDEIS GYCIEDSDEE CVTVPTKRQS RINTPAVSHA SRGSSRSPPS K
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)