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AT4G21570.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
endoplasmic reticulum 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31520498 (2020): mitochondrion
  • PMID:22923678 (2012): endoplasmic reticulum
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : Protein of unknown function (DUF300)
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Protein of unknown function (DUF300); INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF300 (InterPro:IPR005178); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF300) (TAIR:AT1G11200.1); Has 836 Blast hits to 835 proteins in 194 species: Archae - 0; Bacteria - 0; Metazoa - 284; Fungi - 192; Plants - 240; Viruses - 0; Other Eukaryotes - 120 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410XQ3VeggNOG:KOG2641EMBL:AL022603EMBL:AL035527
EMBL:AL161555EMBL:AY092966EMBL:AY114568EMBL:CP002687
EnsemblPlants:AT4G21570EnsemblPlants:AT4G21570.1entrez:828242GeneID:828242
GO:GO:0005783GO:GO:0016021Gramene:AT4G21570.1hmmpanther:PTHR23423
hmmpanther:PTHR23423:SF15HOGENOM:HOG000242333InterPro:IPR005178KEGG:ath:AT4G21570
OMA:QGSKTFFPANTHER:PTHR23423Pfam:PF03619PhylomeDB:O65422
PIR:T05165Proteomes:UP000006548RefSeq:NP_193888.1STRING:3702.AT4G21570.1
TAIR:AT4G21570TMHMM:TMhelixUniGene:At.43310UniProt:O65422
Coordinates (TAIR10) chr4:-:11471126..11472269
Molecular Weight (calculated) 33995.60 Da
IEP (calculated) 9.25
GRAVY (calculated) 0.54
Length 294 amino acids
Sequence (TAIR10)
(BLAST)
001: MMDLTKLKPP QITFYCSAFS VLLTLHFTIQ LVSQHLFHWK NPKEQKAILI IVLMAPIYAV VSFIGLLEVK GSETFFLFLE SIKECYEALV IAKFLALMYS
101: YLNISMSKNI LPDGIKGREI HHSFPMTLFQ PHVVRLDRHT LKLLKYWTWQ FVVIRPVCST LMIALQLIGF YPSWLSWTFT IIVNFSVSLA LYSLVIFYHV
201: FAKELAPHNP LAKFLCIKGI VFFVFWQGIA LDILVAMGFI KSHHFWLEVE QIQEAIQNVL VCLEMVIFAA VQKHAYHAGP YSGETKKKLD KKTE
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)