suba logo
AT3G15350.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

.
SUBAcon:
extracellular 0.982
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein; FUNCTIONS IN: transferase activity, transferring glycosyl groups, acetylglucosaminyltransferase activity; INVOLVED IN: carbohydrate biosynthetic process; LOCATED IN: endomembrane system, integral to membrane, membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glycosyl transferase, family 14 (InterPro:IPR003406), Core-2/I-Branching enzyme (InterPro:IPR021141); BEST Arabidopsis thaliana protein match is: Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (TAIR:AT1G53100.1); Has 959 Blast hits to 959 proteins in 120 species: Archae - 0; Bacteria - 47; Metazoa - 560; Fungi - 0; Plants - 315; Viruses - 14; Other Eukaryotes - 23 (source: NCBI BLink).
Protein Annotations
CAZy:GT14eggNOG:ENOG410XQ7MeggNOG:KOG0799EMBL:AP000413
EMBL:AY075589EMBL:AY102127EMBL:CP002686EMBL:KJ138824
EnsemblPlants:AT3G15350EnsemblPlants:AT3G15350.1EnsemblPlants:AT3G15350.2entrez:820766
GeneID:820766GO:GO:0008375GO:GO:0016020Gramene:AT3G15350.1
Gramene:AT3G15350.2hmmpanther:PTHR19297hmmpanther:PTHR19297:SF75InterPro:IPR003406
KEGG:ath:AT3G15350OMA:RTINGIFPfam:PF02485PhylomeDB:Q9LE60
Proteomes:UP000006548RefSeq:NP_566506.1RefSeq:NP_974319.1SMR:Q9LE60
STRING:3702.AT3G15350.1TAIR:AT3G15350TMHMM:TMhelixUniGene:At.1578
UniGene:At.71086UniProt:Q9LE60
Coordinates (TAIR10) chr3:+:5167250..5168882
Molecular Weight (calculated) 48543.60 Da
IEP (calculated) 9.73
GRAVY (calculated) -0.24
Length 424 amino acids
Sequence (TAIR10)
(BLAST)
001: MGYVNVEKRW VFPLVITSLV CVFLLATSFN MGLVSSLRTI NGIFSIIPSR LVKNQTRLDF AESKVARQTR VLPHEDKLPR FAYLVSGSKG DVEKLWRTLR
101: AVYHPRNQYV VHLDLESPVN ERLELASRIN NDPMYSKTGN VYMITKANLV TYKGPTMVAN TLHACAVLLK RNANWDWFIN LSASDYPLVT QDDLLHTFST
201: LDRNLNFIEH TSQLGWKEEK RAQPLMIDPG LYLLNKSDIY WVTPRRSLPT AFKLFTGSAW MALSRPFVEY CIWGWDNLPR TLLMYYTNFV SSPEGYFQTV
301: ICNVPEFAKT AVNHDLHYIS WDNPPQQHPH VLSLNDTMPM IWSGAAFARK FRRDDEVLNK IDKELLKRRN DKDSFTPGGW CSGKPKCSRV GNVAKIVPSF
401: GAQRLQGLVT RLVNEANTGV SQCK
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)