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AT1G02270.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
mitochondrion 0.597
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Calcium-binding endonuclease/exonuclease/phosphatase family
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Calcium-binding endonuclease/exonuclease/phosphatase family; FUNCTIONS IN: catalytic activity, calcium ion binding; INVOLVED IN: response to cold; LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: EF-HAND 2 (InterPro:IPR018249), EF-hand-like domain (InterPro:IPR011992), Endonuclease/exonuclease/phosphatase (InterPro:IPR005135); BEST Arabidopsis thaliana protein match is: Calcium-binding endonuclease/exonuclease/phosphatase family (TAIR:AT5G54130.2); Has 514 Blast hits to 514 proteins in 124 species: Archae - 0; Bacteria - 0; Metazoa - 161; Fungi - 59; Plants - 214; Viruses - 0; Other Eukaryotes - 80 (source: NCBI BLink).
Protein Annotations
eggNOG:COG5239eggNOG:KOG2338EMBL:AY052704EMBL:AY063716
EMBL:CP002684EMBL:U89959EnsemblPlants:AT1G02270EnsemblPlants:AT1G02270.1
entrez:839381Gene3D:1.10.238.10Gene3D:3.60.10.10GeneID:839381
Genevisible:O81916GO:GO:0005509GO:GO:0005634GO:GO:0009409
GO:GO:0016021Gramene:AT1G02270.1hmmpanther:PTHR12121hmmpanther:PTHR12121:SF44
HOGENOM:HOG000006305InParanoid:O81916InterPro:IPR002048InterPro:IPR005135
InterPro:IPR011992KEGG:ath:AT1G02270OMA:RLDQQNQPaxDb:O81916
Pfam:O81916Pfam:PF03372Pfscan:PS50222PhylomeDB:O81916
PRIDE:O81916PRO:PR:O81916PROSITE:PS50222ProteinModelPortal:O81916
Proteomes:UP000006548RefSeq:NP_563646.1SMR:O81916STRING:3702.AT1G02270.1
SUPFAM:SSF47473SUPFAM:SSF56219TAIR:AT1G02270TMHMM:TMhelix
UniGene:At.10716UniProt:O81916
Coordinates (TAIR10) chr1:-:443301..446197
Molecular Weight (calculated) 55477.30 Da
IEP (calculated) 7.85
GRAVY (calculated) -0.29
Length 484 amino acids
Sequence (TAIR10)
(BLAST)
001: MQSHQNRSRL SLILRSRFIP SFSSPLSLFV VLAAVPLPIY FSGLLSGRNN KPLSVMRLNS NLASSMVESN ISCTTFNILA PIYKRVDQKN HSTRESDFRT
101: LWLARNQRIL DLLLHQRSSV ICLQEVWVGN EELVNMYHHQ LSSSGYTIYQ LARTNSRGDG LLTAIHKDHF KVVNYRELLF NDFGDRVAQL LHVKTVIPFP
201: LNGKQDVQQE VIIVNTHLLF PHDSSLSIVR LHQVYKILEY LEAYQKENKL NHMPIILCGD WNGSKRGHVY KFLRSQGFIS SYDDAHQYTD SDAHRWVSHR
301: NHRGNICGVD FIWLCNPSDS RKPLRTSWVE AVFSIIKYQL HKASIAEDDA FTFLGAKNHS DSLTYSDFCL ALQKVNLTGI PHGLSFEETK ELWVRADLDG
401: NGVFDYEELK KIWNMTMVNQ PGNCKESVME SKKEEGEDEA IGLKVNKAIL FPQEAEKGLW PENYNISDHA CLTVQFSPVK MLCS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)