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AT1G21380.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 0.403
cytosol 0.378
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31541795 (2020): plasma membrane
  • PMID:26781341 (2016): plasma membrane
  • PMID:26572690 (2016): extracellular region plant-type cell wall
  • PMID:22318864 (2012): plasma membrane
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Target of Myb protein 1
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Target of Myb protein 1; FUNCTIONS IN: protein transporter activity; INVOLVED IN: intracellular protein transport, intra-Golgi vesicle-mediated transport; LOCATED IN: Golgi stack, intracellular; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: VHS (InterPro:IPR002014), Target of Myb protein 1 (InterPro:IPR014645), GAT (InterPro:IPR004152), VHS subgroup (InterPro:IPR018205), ENTH/VHS (InterPro:IPR008942); BEST Arabidopsis thaliana protein match is: Target of Myb protein 1 (TAIR:AT1G76970.1); Has 1707 Blast hits to 1699 proteins in 198 species: Archae - 0; Bacteria - 6; Metazoa - 892; Fungi - 452; Plants - 279; Viruses - 0; Other Eukaryotes - 78 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410Y26GeggNOG:KOG1087EMBL:AC015447EMBL:AY034974
EMBL:AY062980EMBL:CP002684EnsemblPlants:AT1G21380EnsemblPlants:AT1G21380.1
entrez:838737Gene3D:1.20.58.160Gene3D:1.25.40.90GeneID:838737
GO:GO:0005622GO:GO:0006886Gramene:AT1G21380.1hmmpanther:PTHR13856
hmmpanther:PTHR13856:SF95HOGENOM:HOG000237674InterPro:IPR002014InterPro:IPR004152
InterPro:IPR008942InterPro:IPR014645KEGG:ath:AT1G21380OMA:NCGESVY
Pfam:PF00790Pfam:PF03127Pfscan:PS50179Pfscan:PS50909
PhylomeDB:Q9LPL6PIR:H86346PIRSF:PIRSF036948PROSITE:PS50179
PROSITE:PS50909Proteomes:UP000006548Reactome:R-ATH-432720RefSeq:NP_564138.1
SMART:SM00288SMR:Q9LPL6STRING:3702.AT1G21380.1SUPFAM:SSF48464
SUPFAM:SSF89009TAIR:AT1G21380UniGene:At.21498UniGene:At.71200
UniProt:Q9LPL6
Coordinates (TAIR10) chr1:-:7485806..7488032
Molecular Weight (calculated) 55794.10 Da
IEP (calculated) 4.62
GRAVY (calculated) -0.65
Length 506 amino acids
Sequence (TAIR10)
(BLAST)
001: MANNAAACAE RATNDMLIGP DWAINIELCD IINMEPSQAK EAVKVLKKRL GSKNSKVQIL ALYALETLSK NCGESVYQLI VDRDILPDMV KIVKKKPDLT
101: VREKILSLLD TWQEAFGGSG GRFPQYYNAY NELRSAGIEF PPRTESSVPF FTPPQTQPIV AQATASDEDA AIQASLQSDD ASALSMEEIQ SAQGSVDVLT
201: DMLGALDPSH PEGLKEELIV DLVEQCRTYQ RRVMALVNTT SDEELMCQGL ALNDNLQRVL QHHDDKAKGN SVPATAPTPI PLVSINHDDD DDESDDDFLQ
301: LAHRSKRESA RGTGQGNFNP ILPPPPSSMR PVHVDSGAMD FLSGDVYKPQ ETFENVKPPS TSQSSNHDYS APIFDEPVPQ SKSPEHALFT KPVYDQTEQL
401: PPAPWETQEP RKYPPSMSAR TNKRPEYFQH NVPQHSSSAS ESSYDDLLGQ SRNLSLNPTA SAAPVTPPKK DDKPEDILFK DLMDFAKTRT SSSSSSKPNN
501: QNNKPF
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)