AT1G34220.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Regulator of Vps4 activity in the MVB pathway protein | ||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Regulator of Vps4 activity in the MVB pathway protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF292, eukaryotic (InterPro:IPR005061); BEST Arabidopsis thaliana protein match is: Regulator of Vps4 activity in the MVB pathway protein (TAIR:AT4G35730.1); Has 2168 Blast hits to 1128 proteins in 249 species: Archae - 0; Bacteria - 95; Metazoa - 396; Fungi - 227; Plants - 323; Viruses - 1; Other Eukaryotes - 1126 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:-:12463102..12465911 | ||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 72577.20 Da | ||||||||||||||||||||||||||||||||
| IEP (calculated) | 4.90 | ||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.74 | ||||||||||||||||||||||||||||||||
| Length | 649 amino acids | ||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MSMLDSFFNK GFKAAKCKTL LKLTIPRIKL IRNRREAQIK QMRREIAKLL ETGQEATARI RVEHIIREEK MMAAQEILEL FCELIAVRLP IIEAQRECPL 101: DLKEAISSVC FAAPRCSDLT ELQQVQILFV SKYGKEFVAA ASELKPDSGV NRKTESLIFI AWFSLVETRD LFMFLYFSNS ILQLVELLSV RAPSPETKLK 201: LLKEIAEEHE LDWDPASTET DLFKSHEDLL DGPKQFGGGS KLPLPEEQNE KTNLTSLSAA KEKSDSDSEY DILDFPEVPN VLLRPTPGAT SVNAPDAAKS 301: ASYEHTSHDL PFDSENAGVE KTASKRDEHP AKASKTVVEG QQSSPILMES FEKKNYSPPS IDAVGPIPTK ESGASRDTPR KISDGDLQDV LMAAQAAADS 401: AERAASAARS AASLAQLRIN ELTRKTSDQY PESPSENPFH APSMGNLQFD HQNSSASSSG DLTELQRAET SSLFNSEQNN QQPQTHSSME KPQFDRQNSS 501: FSSYGDLTPQ RFHSMEKPQF DHQNSSGSNY DDLTPQRFSS LEKPQFDHQN SSGSNYDDLT PHRFPSMEKP QFDHQNSSVS SYGDLPELQR PETSPLDRLS 601: PDQDHQQMRL PSMEDDPYYS YPNLFTSQKH DPSSGSHSFS DNTRPAHDS |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)