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AT2G38410.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : ENTH/VHS/GAT family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
ENTH/VHS/GAT family protein; FUNCTIONS IN: protein transporter activity; INVOLVED IN: intracellular protein transport, intra-Golgi vesicle-mediated transport; LOCATED IN: Golgi stack, plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: VHS (InterPro:IPR002014), GAT (InterPro:IPR004152), VHS subgroup (InterPro:IPR018205), ENTH/VHS (InterPro:IPR008942); BEST Arabidopsis thaliana protein match is: ENTH/VHS/GAT family protein (TAIR:AT5G01760.1); Has 42231 Blast hits to 23362 proteins in 1216 species: Archae - 12; Bacteria - 2643; Metazoa - 15006; Fungi - 7319; Plants - 4169; Viruses - 367; Other Eukaryotes - 12715 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410Y26GeggNOG:KOG1087EMBL:AC004683EMBL:BT046195
EMBL:CP002685EnsemblPlants:AT2G38410EnsemblPlants:AT2G38410.1entrez:818422
Gene3D:1.20.58.160Gene3D:1.25.40.90GeneID:818422GO:GO:0005622
GO:GO:0005886GO:GO:0006886Gramene:AT2G38410.1hmmpanther:PTHR13856
hmmpanther:PTHR13856:SF75HOGENOM:HOG000241362InterPro:IPR002014InterPro:IPR004152
InterPro:IPR008942KEGG:ath:AT2G38410ncoils:CoilOMA:ANDGDAC
Pfam:PF00790Pfam:PF03127Pfscan:PS50179Pfscan:PS50909
PhylomeDB:O80910PIR:T02504PROSITE:PS50179PROSITE:PS50909
Proteomes:UP000006548Reactome:R-ATH-432720RefSeq:NP_181375.1SMART:SM00288
SMR:O80910STRING:3702.AT2G38410.1SUPFAM:SSF48464SUPFAM:SSF89009
TAIR:AT2G38410UniGene:At.12782UniProt:O80910
Coordinates (TAIR10) chr2:-:16086912..16090047
Molecular Weight (calculated) 72322.10 Da
IEP (calculated) 5.60
GRAVY (calculated) -0.67
Length 671 amino acids
Sequence (TAIR10)
(BLAST)
001: MASSSASATV AVDKATSDLL LGPDWTTNME ICDSVNSLHW QAKDVVKAVK KRLQHKSSRV QLLALTLLET LVKNCGDYLH HQVAEKNILG EMVKIVKKKA
101: DMQVRDKILV MVDSWQQAFG GPEGKYPQYY WAYDELRRSG VEFPRRSPDA SPIITPPVSH PPLRQPQGGY GVPPAGYGVH QAGYGVPQAG YGIPQAGYGV
201: PQAGYGIPQV GYGMPSGSSR RLDEAMATEV EGLSLSSIES MRDVMDLLGD MLQAVDPSDR EAVKDEVIVD LVERCRSNQK KLMQMLTSTG DDELLGRGLD
301: LNDSLQILLA KHDAIASGSP LPVQASGSPL SVQASKPADS SPKSSEAKDS SSIAGSSSPI PATVSTGKSP IDEEYEEEED EFAQLARRHS KPPASVTTDP
401: TSLESHNAAS NALALALPDP PPPVNTTKEQ DMIDLLSITL CTPSTPPAPS SQPSPPPPAG SDQNTHIYPQ PQPRFDSYVA PWAQQQQPQQ PQAQQGYSQH
501: QQHQQQQGYS QPQHSQQQQG YSQLQQPQPQ QGYSQSQPQA QVQMQPSTRP QNPYEYPPPP WASTSANAYY TPRANASASY TDTSALAGRS LQQSNSFPTR
601: AGDPQATSTA SNSGVSVGQK PFVPSYRLFE DLDVFGSADG KHNKPANSSN GSQNLSGSQT QQSMIGGRKM I
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)