suba logo
AT3G15070.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

.
SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : RING/U-box superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
RING/U-box superfamily protein; FUNCTIONS IN: zinc ion binding; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT1G53190.2); Has 7358 Blast hits to 7345 proteins in 274 species: Archae - 0; Bacteria - 4; Metazoa - 2154; Fungi - 590; Plants - 3295; Viruses - 49; Other Eukaryotes - 1266 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG41121N2eggNOG:KOG0800EMBL:AF385699EMBL:AY143948
EMBL:CP002686EnsemblPlants:AT3G15070EnsemblPlants:AT3G15070.1EnsemblPlants:AT3G15070.2
entrez:820736Gene3D:3.30.40.10GeneID:820736GO:GO:0008270
Gramene:AT3G15070.1Gramene:AT3G15070.2hmmpanther:PTHR22937hmmpanther:PTHR22937:SF48
InterPro:IPR001841InterPro:IPR013083KEGG:ath:AT3G15070OMA:CTICQEN
Pfam:PF13639Pfscan:PS50089PROSITE:PS50089Proteomes:UP000006548
RefSeq:NP_001189897.1RefSeq:NP_566498.1SMART:SM00184SMR:Q94F54
STRING:3702.AT3G15070.1SUPFAM:SSF57850TAIR:AT3G15070UniGene:At.24446
UniGene:At.70390UniProt:Q94F54
Coordinates (TAIR10) chr3:-:5070472..5072344
Molecular Weight (calculated) 54745.90 Da
IEP (calculated) 6.65
GRAVY (calculated) -0.67
Length 486 amino acids
Sequence (TAIR10)
(BLAST)
001: MRQRNMMTGS DMEQNSQSFV PHPEPRIGTN YLYPDIPPVN TVPHLEAHSL QEPYDNNSMF YGPPQYHHQH ASNLGSGMST APNFYVPYVN YEAPPSFLLS
101: HGSNDAVVGV TSTEHERNAH FMDHGFKRKS SEVIPGNSQY PVAPCSFPQL NTSETAPFSF PHFGTYPQPL DQRSVRNRAG AATMDPLLSH GHNNFSQGNY
201: AAHPFPPLGS IWYDQHCNGN RSDGSSSLWS QAPAVPYMHG NIATGSIESG NVCFPRYHET SSSRNPTPSV YQRNHYISHH PVPPPPIVYP HMPSASYAET
301: LHPASYSHMG QVQSTGFRIN QYPGEDFVPA AILRHRELPH FRAMPANENA FWEVGDFYNA VNYVDHHQDM RLDIEDMSYE ELLALSDQIG TVKTGLSSED
401: VKELLKRRTS TRINLEEGPS TDLETDSCTI CQENYKNEDK IATLDCMHKY HAECLKKWLV IKNVCPICKS EALVIEKKKK LRLSSR
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)