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AT1G53190.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : RING/U-box superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
RING/U-box superfamily protein; FUNCTIONS IN: zinc ion binding; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT3G15070.2); Has 8436 Blast hits to 8420 proteins in 276 species: Archae - 0; Bacteria - 0; Metazoa - 2403; Fungi - 639; Plants - 3969; Viruses - 29; Other Eukaryotes - 1396 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG41121N2eggNOG:KOG0800EMBL:BT020580EMBL:BT029187
EMBL:CP002684EnsemblPlants:AT1G53190EnsemblPlants:AT1G53190.1EnsemblPlants:AT1G53190.2
entrez:841753Gene3D:3.30.40.10GeneID:841753GO:GO:0008270
Gramene:AT1G53190.1Gramene:AT1G53190.2hmmpanther:PTHR22937hmmpanther:PTHR22937:SF48
HOGENOM:HOG000238152InterPro:IPR001841InterPro:IPR013083KEGG:ath:AT1G53190
OMA:DNSAMFYPfam:PF13639Pfscan:PS50089PhylomeDB:Q5EAI9
PROSITE:PS50089Proteomes:UP000006548RefSeq:NP_001031177.1RefSeq:NP_175727.2
SMART:SM00184SMR:Q5EAI9SUPFAM:SSF57850TAIR:AT1G53190
UniGene:At.43317UniProt:Q5EAI9
Coordinates (TAIR10) chr1:+:19838072..19840003
Molecular Weight (calculated) 55126.40 Da
IEP (calculated) 6.66
GRAVY (calculated) -0.75
Length 494 amino acids
Sequence (TAIR10)
(BLAST)
001: MGQRNRNVDL EMEQQQSQAS LQAEPCILLG SFPQQPDNNN MPAMVAHVPN LEPHSLQDPT YDNSAMFYGL PQYHHHPHQR VPTNFYVPYV AFQAPPGQLP
101: SSSSHGVVGV SPDHEYERNA HFMDHTRGTY KRKNAEGIPG QPQYLSTLAA PFNTPETIAP FGGARNRPGA VTVNTVLPSH APNNFIQGNY AGHHPFPPPG
201: SMWYDQHHGR SDGSPSFWPT PYMHGSNIFA GSIESSSRNP TSFMYPSQLN PRDHYYSHHH HPAPPPVQGM RGQNATLYPH TASSASYRVP PGSFTPQNTM
301: NSGPLGSEMG SSHMGPVQPT GFRIYQHHQR DDSVPVATLR QHRGGVPRLR VMPDDEVALL EFGDFLGGSG NNHIDHHRDM RLDIEEMSYE ELLALSERIG
401: TVNTGLPEED VKNHLKTRTC SGINFEKESS SPRTKDLETE PCTICQESFK NEEKIATLDC GHEYHAECLE KWLIVKNVCP ICKSEALVME KRKV
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)