AT4G24630.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plasma membrane 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : DHHC-type zinc finger family protein | ||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
DHHC-type zinc finger family protein; FUNCTIONS IN: receptor activity, zinc ion binding; INVOLVED IN: multicellular organismal development; LOCATED IN: plasma membrane; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, DHHC-type (InterPro:IPR001594), Plexin-like fold (InterPro:IPR016201); BEST Arabidopsis thaliana protein match is: DHHC-type zinc finger family protein (TAIR:AT5G50020.2); Has 5142 Blast hits to 5136 proteins in 249 species: Archae - 0; Bacteria - 0; Metazoa - 2201; Fungi - 738; Plants - 841; Viruses - 0; Other Eukaryotes - 1362 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr4:+:12714919..12717111 | ||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 46749.10 Da | ||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 8.42 | ||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.18 | ||||||||||||||||||||||||||||||||||||||||||||
| Length | 407 amino acids | ||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MTQRVFQVWK GSNKFILGGR LIFGPDARSL PLTLLLIIVP VVLFCVFVAR HLRHEFSPYN AGYAIMVVAI LFTIYVLILL FFTSARDPGI VPRNSHPPEE 101: DLRYETTVSA DGRQTPSVQI PRTKEVIVNG VSVRVKYCDT CMLYRPPRCS HCSICNNCVE RFDHHCPWVG QCIGLRNYRY FFMFVSSSTL LCIYIFSMSA 201: VYIKILMDHQ QATVWRAMKE SPWAVVLMIY CFIALWFVGG LTAFHLYLIS TNQTTYEKLR YRSSHSRSIV YNRGCPNNFL EVFCSKVKPS RNNFRAFIEE 301: EPPRVITLPS TTRESGEAED ENVTRRQKVE DDLDIGDDLM NLSRRCNAED ANNNQPHHTL DIDHERAGSI RTEARHESWG RRSGSWDVAA TDVRESRSYA 401: TAKDGRG |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)