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AT1G07745.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : homolog of RAD51 D
Curator
Summary (TAIR10)
Is a suppressor of SNI1. Encodes a member of the RecA/RAD51 family of DNA recombination and repair proteins. Both RAD51 and SNI1 have a dual role in pathogen-related gene transcription and somatic homologous recombination.
Computational
Description (TAIR10)
homolog of RAD51 D (RAD51D); FUNCTIONS IN: DNA-dependent ATPase activity, DNA binding, ATP binding; INVOLVED IN: DNA repair, somatic cell DNA recombination, regulation of response to biotic stimulus; EXPRESSED IN: sperm cell, male gametophyte, flower; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: DNA recombination/repair protein RecA/RadB, ATP-binding domain (InterPro:IPR020588), DNA recombination and repair protein Rad51, C-terminal (InterPro:IPR013632); BEST Arabidopsis thaliana protein match is: DNA repair (Rad51) family protein (TAIR:AT2G28560.1); Has 4147 Blast hits to 4147 proteins in 1269 species: Archae - 448; Bacteria - 1641; Metazoa - 721; Fungi - 410; Plants - 391; Viruses - 2; Other Eukaryotes - 534 (source: NCBI BLink).
Protein Annotations
eggNOG:COG0468eggNOG:KOG1433EMBL:AB194811EMBL:AC007583
EMBL:AJ549434EMBL:CP002684EnsemblPlants:AT1G07745EnsemblPlants:AT1G07745.1
entrez:837289ExpressionAtlas:Q9LQQ2Gene3D:3.40.50.300GeneID:837289
Genevisible:Q9LQQ2GO:GO:0000150GO:GO:0000400GO:GO:0000707
GO:GO:0003690GO:GO:0003697GO:GO:0005524GO:GO:0005657
GO:GO:0006281GO:GO:0006312GO:GO:0007131GO:GO:0008094
GO:GO:0010212GO:GO:0016444GO:GO:0033063GO:GO:0042148
GO:GO:1900426hmmpanther:PTHR22942hmmpanther:PTHR22942:SF29HOGENOM:HOG000242993
InParanoid:Q9LQQ2InterPro:IPR013632InterPro:IPR020588InterPro:IPR027417
OMA:PQGRSMMPaxDb:Q9LQQ2Pfam:PF08423Pfam:Q9LQQ2
Pfscan:PS50162PhylomeDB:Q9LQQ2PIR:H86212PRIDE:Q9LQQ2
PRO:PR:Q9LQQ2PROSITE:PS50162ProteinModelPortal:Q9LQQ2Proteomes:UP000006548
Reactome:R-ATH-5693616RefSeq:NP_172254.2SMR:Q9LQQ2STRING:3702.AT1G07745.1
SUPFAM:SSF52540TAIR:AT1G07745tair10-symbols:ATRAD51Dtair10-symbols:RAD51D
tair10-symbols:SSN1UniGene:At.26372UniProt:A3QS62UniProt:Q9LQQ2
Coordinates (TAIR10) chr1:-:2400797..2402842
Molecular Weight (calculated) 35385.70 Da
IEP (calculated) 8.04
GRAVY (calculated) -0.15
Length 322 amino acids
Sequence (TAIR10)
(BLAST)
001: MAPLKHLEKE NPIIDACFQD FCASHGILTI EDFLLHDLYE LTAFSQRQTN ADRLKEGITL ILSLIERQCR PLVNGLKLLE DLHRNKHTLS TGDKETDSLL
101: QGGFREGQLT ELVGPSSSGK TQFCMQAAAS VAENHLGRVL YLDTGNSFSA RRIAQFICSS SDATLGQKVM SRILCHTVYD IYTLFDTLQD LEITLRLQMN
201: VNESRLRLLV VDSISSLITP ILGGSGSQGR ALMVAIGYLL KKLAHEHSIA ILVTNHTVGA GGEGGKTKPA LGETWKSIPH VRLSLSRDHK NSNCTISILK
301: HTSLPSGQAA KTLTRKENQQ CP
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)