AT1G07745.1
Subcellular Consensus
(Prediction and Experimental) min: :max .
SUBAcon:nucleus 1.000 ASURE: nucleus What is SUBAcon? |
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Experimental Localisations and PPI |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
SUBAcon links
AGI-AGI relationships |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Description (TAIR10) | protein_coding : homolog of RAD51 D | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Curator Summary (TAIR10) |
Is a suppressor of SNI1. Encodes a member of the RecA/RAD51 family of DNA recombination and repair proteins. Both RAD51 and SNI1 have a dual role in pathogen-related gene transcription and somatic homologous recombination. | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Computational Description (TAIR10) |
homolog of RAD51 D (RAD51D); FUNCTIONS IN: DNA-dependent ATPase activity, DNA binding, ATP binding; INVOLVED IN: DNA repair, somatic cell DNA recombination, regulation of response to biotic stimulus; EXPRESSED IN: sperm cell, male gametophyte, flower; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: DNA recombination/repair protein RecA/RadB, ATP-binding domain (InterPro:IPR020588), DNA recombination and repair protein Rad51, C-terminal (InterPro:IPR013632); BEST Arabidopsis thaliana protein match is: DNA repair (Rad51) family protein (TAIR:AT2G28560.1); Has 4147 Blast hits to 4147 proteins in 1269 species: Archae - 448; Bacteria - 1641; Metazoa - 721; Fungi - 410; Plants - 391; Viruses - 2; Other Eukaryotes - 534 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Protein Annotations |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Coordinates (TAIR10) | chr1:-:2400797..2402842 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Molecular Weight (calculated) | 35385.70 Da | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
IEP (calculated) | 8.04 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
GRAVY (calculated) | -0.15 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Length | 322 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sequence (TAIR10) (BLAST) |
001: MAPLKHLEKE NPIIDACFQD FCASHGILTI EDFLLHDLYE LTAFSQRQTN ADRLKEGITL ILSLIERQCR PLVNGLKLLE DLHRNKHTLS TGDKETDSLL 101: QGGFREGQLT ELVGPSSSGK TQFCMQAAAS VAENHLGRVL YLDTGNSFSA RRIAQFICSS SDATLGQKVM SRILCHTVYD IYTLFDTLQD LEITLRLQMN 201: VNESRLRLLV VDSISSLITP ILGGSGSQGR ALMVAIGYLL KKLAHEHSIA ILVTNHTVGA GGEGGKTKPA LGETWKSIPH VRLSLSRDHK NSNCTISILK 301: HTSLPSGQAA KTLTRKENQQ CP |
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
See Also |
|
Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)