AT1G48550.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:golgi 1.000 ASURE: golgi What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Vacuolar protein sorting-associated protein 26 | ||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Vacuolar protein sorting-associated protein 26; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: intracellular protein transport, vacuolar transport, retrograde transport, endosome to Golgi; LOCATED IN: retromer complex; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Vacuolar protein sorting-associated protein 26 (InterPro:IPR005377); Has 299 Blast hits to 296 proteins in 113 species: Archae - 0; Bacteria - 0; Metazoa - 125; Fungi - 26; Plants - 78; Viruses - 0; Other Eukaryotes - 70 (source: NCBI BLink). | ||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:-:17950792..17952645 | ||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 36057.10 Da | ||||||||||||||||||||||||||||
| IEP (calculated) | 9.16 | ||||||||||||||||||||||||||||
| GRAVY (calculated) | 0.03 | ||||||||||||||||||||||||||||
| Length | 327 amino acids | ||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MATATTVNVK LSRSNRIYRS SEPVEGKIVI KSATSISHQA IRLSVNGSVN LQVRGGSAGV IESFYGVIKP IQIVKKTIEV KSSGKIPPGT TEIPFSLNLR 101: EPGEGIVEKF YETFHGTNIN IQYLLTADIP RGYLHKPLSA TMEFIIESGR VDLPERPIPP EIVIFYITQD TQRHPLLPDI KTGGFRVTGK LATQCSLQDP 201: LSGELTVEAS SVPITSIDIH LLRVESIIVG ERIVTETSLI QSTQIADGDV CRNMTLPIYV LLPRLLMCPS VFAGPFSVEF KVCITISFKS KLAKAQPKSD 301: PTAPRLWMAL ERLPLELVRT KRDQFSC |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)