AT3G52260.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:cytosol 0.858 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Pseudouridine synthase family protein | ||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Pseudouridine synthase family protein; FUNCTIONS IN: pseudouridine synthase activity, RNA binding; INVOLVED IN: pseudouridine synthesis, RNA modification; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pseudouridine synthase, catalytic domain (InterPro:IPR020103), Pseudouridine synthase, RsuA and RluB/C/D/E/F (InterPro:IPR006145), Pseudouridine synthase, RluC/RluD, conserved site (InterPro:IPR006224), RNA-binding S4 (InterPro:IPR002942); BEST Arabidopsis thaliana protein match is: Pseudouridine synthase family protein (TAIR:AT5G51140.1); Has 17575 Blast hits to 17575 proteins in 2702 species: Archae - 12; Bacteria - 13701; Metazoa - 198; Fungi - 201; Plants - 200; Viruses - 0; Other Eukaryotes - 3263 (source: NCBI BLink). | ||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:-:19383983..19386440 | ||||||||
| Molecular Weight (calculated) | 32501.10 Da | ||||||||
| IEP (calculated) | 8.56 | ||||||||
| GRAVY (calculated) | -0.27 | ||||||||
| Length | 294 amino acids | ||||||||
| Sequence (TAIR10) (BLAST) |
001: MSPPPQRIGL PWPELNDGLA YKDAISSSES ELTTVSEFYF TKYKSSAPLL GWIQRIQNGQ IQIDGEVVKD PNTLLRSGSK LVYSRLPWKE PDTPYSLEVL 101: YEDDDLIALN KPSGLQVLPG GLFQQRTVLT QLQWCFGKND SYIGSRESPH PVPVHRLGRG TSGILLCAKT KLAKTKLAAY FAEGTSLVGS GNLDQECGTG 201: RKLSKIYRAL ADGIVEEDEV VIKQPIGVVR YPGVAQGLYV ASPEGKPAFS KVFVLERDRE KNCSLVKVEI QSGRPHQIRI HLAYMGHPLG TLFM |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)