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AT2G32000.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:24134884 (2013): cytoskeleton microtubules
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : DNA topoisomerase, type IA, core
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
DNA topoisomerase, type IA, core; FUNCTIONS IN: DNA topoisomerase activity, DNA topoisomerase type I activity, DNA binding, nucleic acid binding; INVOLVED IN: DNA topological change, DNA unwinding involved in replication, DNA metabolic process; LOCATED IN: endomembrane system, chromosome; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: DNA topoisomerase, type IA, core (InterPro:IPR000380), DNA topoisomerase, type IA, DNA-binding (InterPro:IPR003602), DNA topoisomerase, type IA, domain 2 (InterPro:IPR003601), DNA topoisomerase, type IA, central (InterPro:IPR013497), DNA topoisomerase, type IA, central region, subdomain 3 (InterPro:IPR013826), Toprim domain, subgroup (InterPro:IPR006154), Toprim domain (InterPro:IPR006171), DNA topoisomerase, type IA, central region, subdomain 1 (InterPro:IPR013824); BEST Arabidopsis thaliana protein match is: topoisomerase 3alpha (TAIR:AT5G63920.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT2G32000-MONOMERBioCyc:ARA:GQT-1922-MONOMEREC:5.99.1.2eggNOG:COG0550
eggNOG:KOG1957EMBL:AC006223EMBL:AK175789EMBL:AK175923
EMBL:AK221174EMBL:CP002685EnsemblPlants:AT2G32000EnsemblPlants:AT2G32000.1
EnsemblPlants:AT2G32000.2entrez:817760ExpressionAtlas:F4ISQ7Gene3D:1.10.460.10
Gene3D:2.70.20.10Gene3D:3.40.50.140GeneID:817760Genevisible:F4ISQ7
GO:GO:0003677GO:GO:0003917GO:GO:0006265GO:GO:0046872
hmmpanther:PTHR11390hmmpanther:PTHR11390:SF20HOGENOM:HOG000184378InParanoid:F4ISQ7
InterPro:IPR000380InterPro:IPR003601InterPro:IPR003602InterPro:IPR006171
InterPro:IPR013497InterPro:IPR013824InterPro:IPR013825InterPro:IPR023405
InterPro:IPR023406KEGG:ath:AT2G32000KO:K03165OMA:HPTCQHS
PANTHER:PTHR11390PaxDb:F4ISQ7Pfam:F4ISQ7Pfam:PF01131
Pfam:PF01751Pfscan:PS50880PIR:G84727PRIDE:F4ISQ7
PRINTS:PR00417PRO:PR:F4ISQ7PROSITE:PS00396PROSITE:PS50880
ProteinModelPortal:F4ISQ7Proteomes:UP000006548RefSeq:NP_001031463.1RefSeq:NP_180760.2
scanprosite:PS00396SMART:SM00436SMART:SM00437SMART:SM00493
SMR:F4ISQ7STRING:3702.AT2G32000.1SUPFAM:SSF56712TAIR:AT2G32000
UniGene:At.38130UniProt:F4ISQ7
Coordinates (TAIR10) chr2:-:13615999..13621563
Molecular Weight (calculated) 97026.60 Da
IEP (calculated) 8.20
GRAVY (calculated) -0.31
Length 865 amino acids
Sequence (TAIR10)
(BLAST)
001: MANLLRVLMV AEKPSIALSI ASVLSHGQMS TRRGSTEVHE FDGMFRGFKA HYRVTSVIGH VFSVDFPEKY QNWATIDPQD LFDAPIIKKE SNPKAHICRH
101: LSNEARGCSY MVLWLDCDRE GENICFEVIE STGFDMKDSK RKVYRARFSS VTEKDISKAM DNLVEPNRDE ALAVDARQEI DLKVGVAFSR FQTSYFQGKY
201: QNLDCRVISY GPCQTPTLGF CVQRYMHINT FKPEKFWALR PYIRKDGYEL QLEWERRRLF DLEAATVFQK LVVEGRTAKV MDVSEKQEVK GRPAGLNTVN
301: LLKVASSALG FGPQTAMHLA ERLYTQGFIS YPRTESTAYP SSFDFTDTLR AQVSNPVWGG YVQRLLSDGF HMPKSGTDAG DHPPITPMRA ATEVMVGGDA
401: WRLYQYVCQH FLGTVSPNCK YIRTKVELSI GGETFHCTGQ RVTEKGFTAI MPWSAVDEKK LPSFLKGERI EVLRVELYEG NTAPPDYLTE SELISLMEKH
501: GIGTDASIAV HINNIGERNY VQVQSGRKMV PTALGITLIR GYQCIDPDLC LPDIRSFIEQ QITLVAKGQA DHSHVVQHVI QQFRRKFSYF VQQIEHMDAL
601: FEAQFSPLAD SGRALSKCGK CLRYMKHITA VPPRLFCGTC EEVYYLPQKG TVKLYKELTC PLDNFELVIY SVPGPEGKSF PLCPYCYNSP PFEGIDTLFG
701: ASKTPNAPAK TKTGAGMPCS LCPHPTCQHS VRNQGVCACP ECEGTLVLDP VSFPKWKLNC NLCSCIVLLP EGAHRITTTS NRCPECDSAI IEIDFNKKTT
801: PLENGATLHQ GCVLCDELLL SLVEVKHGRS FVRRGGRGRG RGRGRGRGGR RGSKSVDPKM SFRDF
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)