AT1G33680.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : KH domain-containing protein | ||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
KH domain-containing protein; FUNCTIONS IN: RNA binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: K Homology, type 1, subgroup (InterPro:IPR018111), K Homology (InterPro:IPR004087), K Homology, type 1 (InterPro:IPR004088); BEST Arabidopsis thaliana protein match is: KH domain-containing protein (TAIR:AT4G10070.1); Has 52223 Blast hits to 31714 proteins in 1554 species: Archae - 80; Bacteria - 6342; Metazoa - 24247; Fungi - 9116; Plants - 4309; Viruses - 323; Other Eukaryotes - 7806 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:+:12204056..12208282 | ||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 80442.90 Da | ||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 4.45 | ||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.96 | ||||||||||||||||||||||||||||||||||||||||
| Length | 763 amino acids | ||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MAEEEVIAIP VQPSDHKRKL ENLESEILEQ QHAGSIDNDV SVDDDKNASD YCQPKRPKLD DEAVDGLGIG GTVENSGDVE SKEEGTEKPI AQSDENQDGN 101: PLIEKVQETI DAEESDNKME DNGKPEDNQL VTPEVVTSQD VSVEESKEVN ISGSQNEGED DSKETNDVVA QKEVENGSKE VTDCDSQKED EANAGGESKE 201: VNGSVSHDEI GDESKEVNGG STHKEVDDTQ STTRRIDVPS SKVGTLIGKG GEMVRYLQVN SGAKIQIRRD AEADPSSALR PVEIIGTVSC IEKAEKLINA 301: VIAEVEAGGV PALAARGVPE QMEIKVPSDK VGVIIGRGGE TIKNMQTKSR ARIQLIPQNE GDASKERTVR ISGDKRQIDI ATALIKDVMY QDGRPSPYSG 401: GFNQQAYQPR GPGGPPQWGS RGPHGPHSMP YNYHHGGPYP SQGSHFRPPN SGGYPPQHMP PRSGYGSGWE QRPPHSGPYD YYGRQGGQNP GPVPSHGASY 501: SQAGAQQTYG QMYDQPHYDN PPMHQSYGGY GGSQQGYPSA GGQHQMQQPS RPYGMQGSAE QGYGPPRPAA PPGDVPYQGP TPAAPSYGST PAAASYGSTP 601: AAPSYGSTPA APSYGSNMAQ QQQYGYASSA PTQQTYPSYS SAAPSDGYNG TQPPAVAPAY EQHGAQPASG VQQTSGGYGQ VPPTGGYSSY PSTQPAYGNT 701: PAQSNGNYGY IGSQYPSYGG GNASAYAAPT GQTAYSQTAP PQAGYEQSAT QSAGYAAAPG TAQ |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)