AT4G31200.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : SWAP (Suppressor-of-White-APricot)/surp RNA-binding domain-containing protein | ||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
SWAP (Suppressor-of-White-APricot)/surp RNA-binding domain-containing protein; FUNCTIONS IN: RNA binding; INVOLVED IN: RNA processing; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF618 (InterPro:IPR006903), SWAP/Surp (InterPro:IPR000061), RNA polymerase II, large subunit, CTD (InterPro:IPR006569); Has 15613 Blast hits to 10676 proteins in 664 species: Archae - 6; Bacteria - 799; Metazoa - 6418; Fungi - 3065; Plants - 3018; Viruses - 214; Other Eukaryotes - 2093 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr4:-:15162323..15164568 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 72500.50 Da | ||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.73 | ||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.79 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 650 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MDRRQHDYAA SSGLPYAQQQ QQQGPNFQQQ QQPQFGFHPQ HPQYPSPMNA SGFIPPHPSM QQFPYQHPMH QQQQPQHLPH PPHPQMFGQQ QPQAFLPHLP 101: PHHLPPPFPG PYDSAPPPPP PADPELQKRI DKLVEYSVKN GPEFEAMMRD RQKDNPDYAF LFGGEGHGYY RYKHFLSMHP PGGPFDPPFP SSSMPMIHHP 201: PNPMMSPSMN NVPGALAVPP IRQPPFPPFH DHHQLQQHLP QPHPFAPHAR PDFDQSTHAF RGLSGPLPAD VAMELNGVLG NLNGTKESIK SAKIWFMQRS 301: PFAPALAEAL RDRVFAMDDS DRQMHIVYLA NDILFDSLQR RTNLHEFDNE ALAFRPILGS MLGRIYHFPQ NKEENQSRLE KILQFWASKE VFDQDTISSL 401: EKEMKSGPPA NTFSHSPIIA AHALQRPGML QQPPNSNVSS TMNLEHLTNP VATQQFIPNV MPPGAFPGSI PLNASVPPPT QPPAGEKPPP YPLFPPGLIP 501: GMVRKMQIGS GVPYSPLSPL DIPTVIPPSD TPQSEVLERV SKFFKEIGEV NPSEGPMGSE SQDDYDNYER DSPQRKGGAC IPPPPNLQVD PETGTYADGS 601: TDKKSGSGRL GLGATADPNE PTQYDDVYTS YRKHRSTNYH TSMSARATTR |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)