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AT3G26990.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : ENTH/VHS family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
ENTH/VHS family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF618 (InterPro:IPR006903), RNA polymerase II, large subunit, CTD (InterPro:IPR006569), ENTH/VHS (InterPro:IPR008942); BEST Arabidopsis thaliana protein match is: ENTH/VHS family protein (TAIR:AT5G65180.1); Has 1003 Blast hits to 995 proteins in 197 species: Archae - 0; Bacteria - 21; Metazoa - 515; Fungi - 219; Plants - 159; Viruses - 1; Other Eukaryotes - 88 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410XRAPeggNOG:KOG2669EMBL:BT015401EMBL:CP002686
EnsemblPlants:AT3G26990EnsemblPlants:AT3G26990.1entrez:822316Gene3D:1.25.40.90
GeneID:822316Gramene:AT3G26990.1hmmpanther:PTHR12460hmmpanther:PTHR12460:SF6
HOGENOM:HOG000029886IntAct:Q66GK1InterPro:IPR006569InterPro:IPR006903
InterPro:IPR008942KEGG:ath:AT3G26990KO:K15559ncoils:Coil
OMA:RDMIENGPfam:PF04818Pfscan:PS51391PhylomeDB:Q66GK1
PROSITE:PS51391Proteomes:UP000006548RefSeq:NP_189335.2SMART:SM00582
SMR:Q66GK1STRING:3702.AT3G26990.1SUPFAM:SSF48464TAIR:AT3G26990
UniGene:At.43702UniProt:Q66GK1
Coordinates (TAIR10) chr3:-:9948426..9951557
Molecular Weight (calculated) 56465.30 Da
IEP (calculated) 6.46
GRAVY (calculated) -0.56
Length 513 amino acids
Sequence (TAIR10)
(BLAST)
001: MGSSFNAQIL VEKLAKLNNS QASIETLSHW CIFHMNKAKH VVETWGRQFH CAPREQRLAY LYLANDILQN SRRKGSEFVG EFWKVLPDAL RDMIENGDDF
101: GRKSARRLVN IWEERKVFGS RGQILKEELL GRQPENGTRN GNLVPLKLSV PQRQVNGSTL EKVVSAVEVL HGVQIDEDAL VGKSTNAAGY LEKATQEVER
201: DLSSGHAPGP AVVKELQGQH VILRDCIEQL GAMETSRTSL ISHLREALQE QELKLEQVRN HLQIARFQSD RTGDLCRQLL DHGGSSQPPA TEEEESKEVI
301: KVSSTAAAPQ SFTHSDVEQS APVMFASNPT QSLEDPRKTA AAAVVAKLTA STSSAEMLSY VLSSLASEGI IGNNNPPAVT ETLSSVDFPP EKRPKLQNHD
401: QSYLSPHHQN TATTSSSTPP QPLPPPPPFQ LQPQFLQPLQ PPGPVNHTPF NYTIATSTAT TQQQQQEQGP WVPGLTQLST TSAPSENSYQ KFQGQDGFYG
501: INSSVPITPV TRQ
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)