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AT4G26750.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:26572690 (2016): extracellular region plant-type cell wall
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : hydroxyproline-rich glycoprotein family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
hydroxyproline-rich glycoprotein family protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF605 (InterPro:IPR006745); BEST Arabidopsis thaliana protein match is: glucan synthase-like 11 (TAIR:AT3G59100.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG4111H3MeggNOG:KOG0917EMBL:AL035440EMBL:AL161565
EMBL:AY048219EMBL:AY094009EMBL:CP002687EnsemblPlants:AT4G26750
EnsemblPlants:AT4G26750.1entrez:828782Gene3D:1.25.40.270GeneID:828782
Genevisible:Q9SZ15GO:GO:0005634GO:GO:0005737GO:GO:0005771
GO:GO:0009814GO:GO:0010008GO:GO:0015031GO:GO:0016192
GO:GO:0042803GO:GO:1900426Gramene:AT4G26750.1hmmpanther:PTHR12741
HOGENOM:HOG000241805InParanoid:Q9SZ15IntAct:Q9SZ15InterPro:IPR023175
KEGG:ath:AT4G26750KO:K12199OMA:RIPQNERPaxDb:Q9SZ15
Pfam:PF04652Pfam:Q9SZ15PhylomeDB:Q9SZ15PIR:T04798
PRIDE:Q9SZ15PRO:PR:Q9SZ15ProteinModelPortal:Q9SZ15Proteomes:UP000006548
RefSeq:NP_194405.1SMR:Q9SZ15STRING:3702.AT4G26750.1TAIR:AT4G26750
UniGene:At.24208UniProt:Q9SZ15
Coordinates (TAIR10) chr4:-:13475848..13478382
Molecular Weight (calculated) 46220.00 Da
IEP (calculated) 6.20
GRAVY (calculated) -0.89
Length 421 amino acids
Sequence (TAIR10)
(BLAST)
001: MSNPNEPARA LLPYLQRADE LQKHEPLVAY YCRLYAMERG LKIPQSERTK TTNSILMSLI NQLEKDKKSL TLSPDDNMHV EGFALSVFAK ADKQDRAGRA
101: DLGTAKTFYA ASIFFEILSQ FGPVPPDIEQ KHKYAAWKAA DIRKAIKEGR KPTPGDPVDD DTDLSIPSSG PSGSYDHSAS DTNTTSHHRT ELDPPHDSND
201: DSSHHQFPEV PQHPLPPRFY DNPTNDYPAD VPPPPPSSYP SNDHLPPPTG PSDSPYPHPY SHQPYHQDPP KHMPPPQNYS SHEPSPNSLP NFQSYPSFSE
301: SSLPSTSPHY PSHYQNPEPY YSSPHSAPAP SSTSFSSAPP PPPYSSNGRI NIAPVLDPAP SSAQKYHYDS SYQPGPEKVA EALKAARFAV GALAFDEVST
401: AVEHLKKSLE LLTNPSAGAG H
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)