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AT1G07310.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
nucleus 0.999
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Calcium-dependent lipid-binding (CaLB domain) family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Calcium-dependent lipid-binding (CaLB domain) family protein; CONTAINS InterPro DOMAIN/s: C2 membrane targeting protein (InterPro:IPR018029), C2 calcium/lipid-binding domain, CaLB (InterPro:IPR008973), C2 calcium-dependent membrane targeting (InterPro:IPR000008); BEST Arabidopsis thaliana protein match is: Calcium-dependent lipid-binding (CaLB domain) family protein (TAIR:AT5G23950.1); Has 16203 Blast hits to 11144 proteins in 837 species: Archae - 8; Bacteria - 1073; Metazoa - 6146; Fungi - 3149; Plants - 3752; Viruses - 463; Other Eukaryotes - 1612 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IX7KeggNOG:ENOG410Y9IGEMBL:AC022464EMBL:AY054646
EMBL:AY081489EMBL:CP002684EnsemblPlants:AT1G07310EnsemblPlants:AT1G07310.1
entrez:837242Gene3D:2.60.40.150GeneID:837242Gramene:AT1G07310.1
hmmpanther:PTHR32246hmmpanther:PTHR32246:SF19HOGENOM:HOG000238477IntAct:Q9LNV0
InterPro:IPR000008KEGG:ath:AT1G07310OMA:FTDHYYSPfam:PF00168
Pfscan:PS50004PhylomeDB:Q9LNV0PROSITE:PS50004Proteomes:UP000006548
RefSeq:NP_563785.1SMART:SM00239SMR:Q9LNV0STRING:3702.AT1G07310.1
SUPFAM:SSF49562TAIR:AT1G07310UniGene:At.23050UniGene:At.32199
UniProt:Q9LNV0
Coordinates (TAIR10) chr1:-:2247775..2248833
Molecular Weight (calculated) 39015.60 Da
IEP (calculated) 7.80
GRAVY (calculated) -0.75
Length 352 amino acids
Sequence (TAIR10)
(BLAST)
001: MTSSEPLDLV VTVVSAKHLK NVNWRNGDLK PYVVLYLDQD HPLSTRSDDS SSIKPVWNER ITLPLTRSVH ESVLNIEVFH SNSSDLAKTL VGSVRFPLAR
101: LIDSDGSMIP ELINSLELVR PSGRPQGKIR LKLAIKDRPI PPPQHPPPRP QSQPLDYYSA PQGNHYYSPS PPPPPPPQAP ITAPSPQRDY REFSQSPSPS
201: PYAFTDHYYS GYYYPPPPPR SMYDRASNYG LPSGPSAPVD AFSSIDHKQP PLAPPRFSNY GPPPSGPSAP VDAFLVTEYK PQAPPMGSRL SSYGVPNGPS
301: APVDYSPYDH RQLQKTMGGL SLEEERAAAE RSESDFGARP NYSYGRDYRR EC
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)