AT3G01560.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 ASURE: nucleus What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Protein of unknown function (DUF1421) | ||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
CONTAINS InterPro DOMAIN/s: Ubiquitin-associated/translation elongation factor EF1B, N-terminal, eukaryote (InterPro:IPR015940), Protein of unknown function DUF1421 (InterPro:IPR010820), UBA-like (InterPro:IPR009060); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF1421) (TAIR:AT5G14540.1); Has 90069 Blast hits to 50370 proteins in 2078 species: Archae - 118; Bacteria - 11979; Metazoa - 33430; Fungi - 17845; Plants - 12302; Viruses - 1904; Other Eukaryotes - 12491 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:+:219884..221707 | ||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 55495.60 Da | ||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.51 | ||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.81 | ||||||||||||||||||||||||||||||||
| Length | 511 amino acids | ||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MNTCQFMDKQ IMDLSSSSSL PSTDFIDLMN NHDGDDHQKK QVIGDNGLDS KKEVIVPSYD FHPIRPTTAA RLSHSALDLA GSTTRVNWSA SDYKPVSTTS 101: PNTNFGSLDS IEPSKLVPDK GQNVFNTTIM SEIIDRTMKK HTDTLLHVME GVSARLSQLE TRTHNLENLV DDLKVSVDNS HGSTDGKMRQ LKNILVEVQS 201: GVQLLKDKQE ILEAQLSKHQ VSNQHAKTHS LHVDPTAQSP APVPMQQFPL TSFPQPPSST AAPSQPPSSQ LPPQLPTQFS SQQEPYCPPP SHPQPPPSNP 301: PPYQAPQTQT PHQPSYQSPP QQPQYPQQPP PSSGYNPEEQ PPYQMQSYPP NPPRQQPPAG STPSQQFYNP PQPQPSMYDG AGGRSNSGFP SGYLSEPYTY 401: SGSPMSSAKP PHISSNGTGY PQLSNSRPLP HALPMVSAVS SGGGSSSPRS ESRAPIDDVI DRVTTMGFPR DQVRATVRKL TENGQAVDLN VVLDKLMNEG 501: GAPPGGFFGG R |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)