AT3G19120.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : PIF / Ping-Pong family of plant transposases | ||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
PIF / Ping-Pong family of plant transposases; LOCATED IN: chloroplast; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Putative harbinger transposase-derived nuclease (InterPro:IPR006912); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G12010.1); Has 644 Blast hits to 642 proteins in 76 species: Archae - 0; Bacteria - 0; Metazoa - 379; Fungi - 49; Plants - 189; Viruses - 3; Other Eukaryotes - 24 (source: NCBI BLink). | ||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:-:6609678..6611018 | ||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 49420.40 Da | ||||||||||||||||||||||||||||
| IEP (calculated) | 8.20 | ||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.08 | ||||||||||||||||||||||||||||
| Length | 446 amino acids | ||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MEEAFMAMLS HLLHLQNSLD PTSTLFSSAS TSSQSSTTPS SLLSTSSAAP LLFFTLASLL SFLAVNRSST ESSSSSESPS PSPPPPLADG DYSVAAFRAL 101: TTDHIWSLDA PLRDARWRSL YGLSYPVFIT VVDKLKPFIT ASNLSLPADY AVAMVLSRLA HGCSAKTLAS RYSLDPYLIS KITNMVTRLL ATKLYPEFIK 201: IPVGKRRLIE TTQGFEELTS LPNICGAIDS TPVKLRRRTK LNPRNIYGCK YGYDAVLLQV VADHKKIFWD VCVKAPGGED DSSHFRDSLL YKRLTSGDIV 301: WEKVINIRGH HVRPYIVGDW CYPLLSFLMT PFSPNGSGTP PENLFDGMLM KGRSVVVEAI GLLKARWKIL QSLNVGVNHA PQTIVACCVL HNLCQIAREP 401: EPEIWKDPDE AGTPARVLES ERQFYYYGES LRQALAEDLH QRLSSR |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)