AT4G28110.1
Subcellular Consensus
(Prediction and Experimental) min: :max .
SUBAcon:nucleus 1.000 ASURE: nucleus What is SUBAcon? |
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Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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Description (TAIR10) | protein_coding : myb domain protein 41 | ||||||||||||||||||||||||||||||||||||||||||||||||
Curator Summary (TAIR10) |
Member of the R2R3 factor gene family. Expression is induced in response to dessication, ABA and salt treatment. Overexpression of Myb41 results in abnormal cuticle development and decreased cell expansion. | ||||||||||||||||||||||||||||||||||||||||||||||||
Computational Description (TAIR10) |
myb domain protein 41 (MYB41); CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), HTH transcriptional regulator, Myb-type, DNA-binding (InterPro:IPR017930), Homeodomain-related (InterPro:IPR012287), Myb transcription factor (InterPro:IPR015495); BEST Arabidopsis thaliana protein match is: MYB-like 102 (TAIR:AT4G21440.1); Has 9017 Blast hits to 8357 proteins in 551 species: Archae - 0; Bacteria - 0; Metazoa - 832; Fungi - 495; Plants - 5900; Viruses - 4; Other Eukaryotes - 1786 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||
Protein Annotations |
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Coordinates (TAIR10) | chr4:-:13968166..13969384 | ||||||||||||||||||||||||||||||||||||||||||||||||
Molecular Weight (calculated) | 31653.20 Da | ||||||||||||||||||||||||||||||||||||||||||||||||
IEP (calculated) | 5.90 | ||||||||||||||||||||||||||||||||||||||||||||||||
GRAVY (calculated) | -0.53 | ||||||||||||||||||||||||||||||||||||||||||||||||
Length | 282 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||
Sequence (TAIR10) (BLAST) |
001: MGRSPCCDKN GVKKGPWTAE EDQKLIDYIR FHGPGNWRTL PKNAGLHRCG KSCRLRWTNY LRPDIKRGRF SFEEEETIIQ LHSVMGNKWS AIAARLPGRT 101: DNEIKNHWNT HIRKRLVRSG IDPVTHSPRL DLLDLSSLLS ALFNQPNFSA VATHASSLLN PDVLRLASLL LPLQNPNPVY PSNLDQNLQT PNTSSESSQP 201: QAETSTVPTN YETSSLEPMN ARLDDVGLAD VLPPLSESFD LDSLMSTPMS SPRQNSIEAE TNSSTFFDFG IPEDFILDDF MF |
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See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)