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AT4G28110.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no coexpression data no PPI data
Description (TAIR10) protein_coding : myb domain protein 41
Curator
Summary (TAIR10)
Member of the R2R3 factor gene family. Expression is induced in response to dessication, ABA and salt treatment. Overexpression of Myb41 results in abnormal cuticle development and decreased cell expansion.
Computational
Description (TAIR10)
myb domain protein 41 (MYB41); CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), HTH transcriptional regulator, Myb-type, DNA-binding (InterPro:IPR017930), Homeodomain-related (InterPro:IPR012287), Myb transcription factor (InterPro:IPR015495); BEST Arabidopsis thaliana protein match is: MYB-like 102 (TAIR:AT4G21440.1); Has 9017 Blast hits to 8357 proteins in 551 species: Archae - 0; Bacteria - 0; Metazoa - 832; Fungi - 495; Plants - 5900; Viruses - 4; Other Eukaryotes - 1786 (source: NCBI BLink).
Protein Annotations
eggNOG:COG5147eggNOG:KOG0048EMBL:AL161572EMBL:AY519610
EMBL:BT001930EMBL:CP002687EnsemblPlants:AT4G28110EnsemblPlants:AT4G28110.1
entrez:828927Gene3D:1.10.10.60GeneID:828927GO:GO:0003677
GO:GO:0003700GO:GO:0009737GO:GO:0010200GO:GO:0016049
GO:GO:0042335GO:GO:0045892GO:GO:0080090GO:GO:0080091
Gramene:AT4G28110.1hmmpanther:PTHR10641hmmpanther:PTHR10641:SF586HOGENOM:HOG000237600
IntAct:Q9M0J5InterPro:IPR001005InterPro:IPR009057InterPro:IPR017930
KEGG:ath:AT4G28110KO:K09422OMA:NLDQNLQPfam:PF00249
Pfscan:PS51294PhylomeDB:Q9M0J5PIR:B85327PRO:PR:Q9M0J5
PROSITE:PS51294Proteomes:UP000006548RefSeq:NP_194540.1SMART:SM00717
SMR:Q9M0J5STRING:3702.AT4G28110.1SUPFAM:SSF46689TAIR:AT4G28110
tair10-symbols:AtMYB41tair10-symbols:MYB41UniGene:At.2669UniProt:Q9M0J5
Coordinates (TAIR10) chr4:-:13968166..13969384
Molecular Weight (calculated) 31653.20 Da
IEP (calculated) 5.90
GRAVY (calculated) -0.53
Length 282 amino acids
Sequence (TAIR10)
(BLAST)
001: MGRSPCCDKN GVKKGPWTAE EDQKLIDYIR FHGPGNWRTL PKNAGLHRCG KSCRLRWTNY LRPDIKRGRF SFEEEETIIQ LHSVMGNKWS AIAARLPGRT
101: DNEIKNHWNT HIRKRLVRSG IDPVTHSPRL DLLDLSSLLS ALFNQPNFSA VATHASSLLN PDVLRLASLL LPLQNPNPVY PSNLDQNLQT PNTSSESSQP
201: QAETSTVPTN YETSSLEPMN ARLDDVGLAD VLPPLSESFD LDSLMSTPMS SPRQNSIEAE TNSSTFFDFG IPEDFILDDF MF
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)