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AT3G07090.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
cytosol 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:26572690 (2016): extracellular region plant-type cell wall
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : PPPDE putative thiol peptidase family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
PPPDE putative thiol peptidase family protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF862, eukaryotic (InterPro:IPR008580); BEST Arabidopsis thaliana protein match is: PPPDE putative thiol peptidase family protein (TAIR:AT5G25170.1); Has 872 Blast hits to 872 proteins in 189 species: Archae - 0; Bacteria - 0; Metazoa - 235; Fungi - 119; Plants - 332; Viruses - 0; Other Eukaryotes - 186 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG4111H3ZeggNOG:KOG0324EMBL:AC012395EMBL:AY065383
EMBL:AY142656EMBL:CP002686EnsemblPlants:AT3G07090EnsemblPlants:AT3G07090.1
entrez:819895GeneID:819895GO:GO:0005634GO:GO:0005737
Gramene:AT3G07090.1hmmpanther:PTHR12378hmmpanther:PTHR12378:SF16HOGENOM:HOG000084879
IntAct:Q9SFT9InterPro:IPR008580KEGG:00261+3.4.-.-KEGG:00310+3.4.-.-
KEGG:00550+3.4.-.-KEGG:00780+3.4.-.-KEGG:ath:AT3G07090OMA:ATIPEYI
Pfam:PF05903PhylomeDB:Q9SFT9Proteomes:UP000006548RefSeq:NP_187365.1
SMART:SM01179SMR:Q9SFT9STRING:3702.AT3G07090.1TAIR:AT3G07090
UniGene:At.27767UniGene:At.40406UniProt:Q9SFT9
Coordinates (TAIR10) chr3:-:2243153..2244476
Molecular Weight (calculated) 28847.70 Da
IEP (calculated) 5.63
GRAVY (calculated) -0.19
Length 265 amino acids
Sequence (TAIR10)
(BLAST)
001: MAEEAHKVTL NVYDLSQGLA RQLSQSLLGK VIEGVWHTGI VVYGNEYFFG GGIQHLPVGR TPYGTPIRTI ELGLSHVPKD VFEMYLEEIS PRYTAESYNL
101: LTHNCNNFSN EVAQFLVGKG IPDYILQLPN DVLNSPMGGL IMPMLQGLET TLKAGAVPQV PQFRPQPQPF GAFSKDDGPQ IVIAPKLEAA ETSTATEKVP
201: PVIQPSASKE KVKDDPLGDA RAKIQEEITS EFAALMAQGT LRASEAAAMA TKRVMQKYGH LNVNA
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)