AT1G07350.1
Subcellular Consensus
(Prediction and Experimental) min: :max .
SUBAcon:nucleus 1.000 What is SUBAcon? |
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Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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Description (TAIR10) | protein_coding : RNA-binding (RRM/RBD/RNP motifs) family protein | ||||||||||||||||||||||||||||||||||||||||||||||||||||
Curator Summary (TAIR10) |
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Computational Description (TAIR10) |
RNA-binding (RRM/RBD/RNP motifs) family protein; FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding; INVOLVED IN: RNA splicing; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: RNA-binding (RRM/RBD/RNP motifs) family protein (TAIR:AT4G35785.1); Has 998067 Blast hits to 992400 proteins in 35925 species: Archae - 21556; Bacteria - 596698; Metazoa - 207042; Fungi - 24534; Plants - 55970; Viruses - 68919; Other Eukaryotes - 23348 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||||||
Protein Annotations |
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Coordinates (TAIR10) | chr1:-:2257732..2260101 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
Molecular Weight (calculated) | 44980.40 Da | ||||||||||||||||||||||||||||||||||||||||||||||||||||
IEP (calculated) | 12.05 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
GRAVY (calculated) | -1.47 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
Length | 382 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sequence (TAIR10) (BLAST) |
001: MGKREIHFTP VGRQVQRVLE YPLRLENRSP MSYSRRSRYS PSLSPYDKRR GRSVSRSLSR SPTRSVSSDA ENPGNSLYVT GLSHRVTERD LEDHFAKEGK 101: VTDVHLVLDP WTRESRGFGF ISMKSVGDAN RCIRSLDHSV LQGRVITVEK ARRRRGRTPT PGKYLGLRTA RGRHKSPSYS PRRSVSCSRS RSRSYSSDRG 201: RSYSPSYGRR GRSSSYSPFY RRRRFYSPSR SPSPDDRYNR RRDRSYSPYY RRRDRSRSYS RNCRARDRSP YYMRRYRSRS RSYSPRYRAR DRSCSPYYRG 301: RDRSYSPHYQ GRDRSYSPES RYYRRHRSVS GSVSPGGRSM SRSISPRKGR KESRSKSRRH DRQSSMCHSR SARSSTSRSV SP |
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See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)