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AT4G28480.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
cytosol 0.994
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : DNAJ heat shock family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
DNAJ heat shock family protein; FUNCTIONS IN: unfolded protein binding, heat shock protein binding; INVOLVED IN: protein folding; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Molecular chaperone, heat shock protein, Hsp40, DnaJ (InterPro:IPR015609), HSP40/DnaJ peptide-binding (InterPro:IPR008971), Chaperone DnaJ, C-terminal (InterPro:IPR002939), Heat shock protein DnaJ, N-terminal (InterPro:IPR001623), Heat shock protein DnaJ (InterPro:IPR003095), Heat shock protein DnaJ, conserved site (InterPro:IPR018253); BEST Arabidopsis thaliana protein match is: DNAJ heat shock family protein (TAIR:AT2G20560.1); Has 28075 Blast hits to 27586 proteins in 3414 species: Archae - 196; Bacteria - 10500; Metazoa - 4718; Fungi - 2638; Plants - 2903; Viruses - 17; Other Eukaryotes - 7103 (source: NCBI BLink).
Protein Annotations
eggNOG:COG0484eggNOG:KOG0714EMBL:AL021749EMBL:AL161572
EMBL:AY042845EMBL:AY081523EMBL:CP002687EnsemblPlants:AT4G28480
EnsemblPlants:AT4G28480.1entrez:828965ExpressionAtlas:O49457Gene3D:1.10.287.110
GeneID:828965GO:GO:0006457Gramene:AT4G28480.1hmmpanther:PTHR24078
hmmpanther:PTHR24078:SF188HOGENOM:HOG000226718InterPro:IPR001623InterPro:IPR002939
InterPro:IPR008971InterPro:IPR018253OMA:RFASRMFPfam:PF00226
Pfam:PF01556Pfscan:PS50076PhylomeDB:O49457PIR:T04618
PRINTS:PR00625PROSITE:PS00636PROSITE:PS50076Proteomes:UP000006548
Reactome:R-ATH-3371453Reactome:R-ATH-3371568Reactome:R-ATH-3371571Reactome:R-ATH-5687128
RefSeq:NP_194577.1scanprosite:PS00636SMART:SM00271SMR:O49457
STRING:3702.AT4G28480.1SUPFAM:SSF46565SUPFAM:SSF49493TAIR:AT4G28480
UniGene:At.25469UniGene:At.66611UniProt:O49457
Coordinates (TAIR10) chr4:+:14073310..14075091
Molecular Weight (calculated) 38193.40 Da
IEP (calculated) 9.41
GRAVY (calculated) -0.59
Length 348 amino acids
Sequence (TAIR10)
(BLAST)
001: MGVDYYKVLQ VDRSANDDDL KKAYRKLAMK WHPDKNPNNK KDAEAKFKQI SEAYDVLSDP QKRAVYDQYG EEGLKGNVPP PNAATSGASY FSTGDGSSSF
101: RFNPRSADDI FAEFFGFSTP FGGGGGGTGG QRFASRMFGD DMYASFGEGA GGGGAMHHHH HHHHHAAARK VAPIENKLPC SLEDLYKGTT KKMKISREIV
201: DVSGKAMQVE EILTIGVKPG WKKGTKITFP EKGNEHPGVI PADLVFIIDE KPHPVFTREG NDLIVTQKVS LADALTGYTA NIATLDGRTL TIPITNVIHP
301: EYEEVVPKEG MPLQKDQTKK GNLRIKFNIK FPARLTAEQK AGFKKLIG
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)