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AT4G38630.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
cytosol 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31818904 (2020): mitochondrion
  • PMID:31615849 (2019): plastid plastid thylakoid
  • PMID:31520498 (2020): mitochondrion
  • PMID:31186290 (2019): cytosol None
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:27177187 (2016): nucleus
  • PMID:27137770 (2016): plastid plastid stroma
  • PMID:25900983 (2015): Golgi Golgi apparatus Golgi membrane
  • PMID:25900983 (2015): Golgi trans-Golgi network
  • PMID:25900983 (2015): Golgi trans-Golgi network early endosome
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:25900983 (2015): plant-type vacuole plant-type vacuole membrane
  • PMID:21433285 (2011): plasma membrane
  • PMID:18433157 (2008): cytosol
  • PMID:18433157 (2008): nucleus
  • PMID:14623898 (2004): cytosol
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : regulatory particle non-ATPase 10
Curator
Summary (TAIR10)
Regulatory particle non-ATPase subunit of the 26S proteasome with multiubiquitin-chain-binding capabilities
Computational
Description (TAIR10)
regulatory particle non-ATPase 10 (RPN10); FUNCTIONS IN: peptide receptor activity; INVOLVED IN: in 19 processes; LOCATED IN: cytosol, proteasome regulatory particle, base subcomplex, proteasome complex, nucleus, membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Ssl1-like (InterPro:IPR007198), Ubiquitin interacting motif (InterPro:IPR003903), von Willebrand factor, type A (InterPro:IPR002035); Has 677 Blast hits to 665 proteins in 240 species: Archae - 0; Bacteria - 16; Metazoa - 271; Fungi - 148; Plants - 120; Viruses - 0; Other Eukaryotes - 122 (source: NCBI BLink).
Protein Annotations
BioGrid:15299eggNOG:COG5148eggNOG:KOG2884EMBL:AF360319
EMBL:AL035540EMBL:AL035656EMBL:AL161593EMBL:AY088449
EMBL:AY113889EMBL:CP002687EMBL:U33269EnsemblPlants:AT4G38630
EnsemblPlants:AT4G38630.1entrez:830019Gene3D:3.40.50.410GeneID:830019
Genevisible:P55034GO:GO:0000502GO:GO:0001653GO:GO:0005634
GO:GO:0005829GO:GO:0006974GO:GO:0007165GO:GO:0008540
GO:GO:0009408GO:GO:0009555GO:GO:0009651GO:GO:0009733
GO:GO:0009735GO:GO:0009737GO:GO:0009744GO:GO:0010029
GO:GO:0010150GO:GO:0016020GO:GO:0030163GO:GO:0031593
GO:GO:0043161GO:GO:0043248GO:GO:0048366GO:GO:0048455
GO:GO:0048528GO:GO:0048767GO:GO:0051788Gramene:AT4G38630.1
hmmpanther:PTHR10223HOGENOM:HOG000165630InParanoid:P55034IntAct:P55034
InterPro:IPR002035InterPro:IPR003903InterPro:IPR027040iPTMnet:P55034
KEGG:ath:AT4G38630KO:K03029MINT:MINT-7308061ncoils:Coil
OMA:ATSPILMPANTHER:PTHR10223PaxDb:P55034Pfam:P55034
Pfam:PF02809Pfam:PF13519Pfscan:PS50234Pfscan:PS50330
PhylomeDB:P55034PIR:T05691PRIDE:P55034PRO:PR:P55034
PROSITE:PS50234PROSITE:PS50330ProteinModelPortal:P55034Proteomes:UP000006548
Reactome:R-ATH-1236978Reactome:R-ATH-174184Reactome:R-ATH-349425Reactome:R-ATH-5632684
Reactome:R-ATH-68949Reactome:R-ATH-69017Reactome:R-ATH-983168RefSeq:NP_195575.1
SMART:SM00327SMART:SM00726SMR:P55034STRING:3702.AT4G38630.1
SUPFAM:SSF53300TAIR:AT4G38630tair10-symbols:ATMCB1tair10-symbols:MBP1
tair10-symbols:MCB1tair10-symbols:RPN10UniGene:At.1553UniProt:P55034
Coordinates (TAIR10) chr4:-:18057357..18059459
Molecular Weight (calculated) 40759.60 Da
IEP (calculated) 4.22
GRAVY (calculated) -0.39
Length 386 amino acids
Sequence (TAIR10)
(BLAST)
001: MVLEATMICI DNSEWMRNGD YSPSRLQAQT EAVNLLCGAK TQSNPENTVG ILTMAGKGVR VLTTPTSDLG KILACMHGLD VGGEINLTAA IQIAQLALKH
101: RQNKNQRQRI IVFAGSPIKY EKKALEIVGK RLKKNSVSLD IVNFGEDDDE EKPQKLEALL TAVNNNDGSH IVHVPSGANA LSDVLLSTPV FTGDEGASGY
201: VSAAAAAAAA GGDFDFGVDP NIDPELALAL RVSMEEERAR QEAAAKKAAD EAGQKDKDGD TASASQETVA RTTDKNAEPM DEDSALLDQA IAMSVGDVNM
301: SEAADEDQDL ALALQMSMSG EESSEATGAG NNLLGNQAFI SSVLSSLPGV DPNDPAVKEL LASLPDESKR TEEEESSSKK GEDEKK
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)