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AT1G16190.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : Rad23 UV excision repair protein family
Curator
Summary (TAIR10)
Encodes a member of the RADIATION SENSITIVE23 (RAD23) family: AT1G16190(RAD23A), AT1G79650(RAD23B), AT3G02540(RAD23C), AT5G38470(RAD23D). RAD23 proteins play an essential role in the cell cycle, morphology, and fertility of plants through their delivery of UPS (ubiquitin/26S proteasome system) substrates to the 26S proteasome.
Computational
Description (TAIR10)
RADIATION SENSITIVE23A (RAD23A); FUNCTIONS IN: damaged DNA binding, ubiquitin binding, proteasome binding; INVOLVED IN: proteasomal ubiquitin-dependent protein catabolic process, base-excision repair, nucleotide-excision repair; LOCATED IN: nucleus; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Heat shock chaperonin-binding (InterPro:IPR006636), Ubiquitin-associated/translation elongation factor EF1B, N-terminal (InterPro:IPR000449), Ubiquitin-associated/translation elongation factor EF1B, N-terminal, eukaryote (InterPro:IPR015940), UV excision repair protein Rad23 (InterPro:IPR004806), Ubiquitin (InterPro:IPR000626), XPC-binding domain (InterPro:IPR015360), Ubiquitin supergroup (InterPro:IPR019955), UBA-like (InterPro:IPR009060); BEST Arabidopsis thaliana protein match is: Rad23 UV excision repair protein family (TAIR:AT1G79650.2); Has 9140 Blast hits to 4719 proteins in 640 species: Archae - 2; Bacteria - 43; Metazoa - 4062; Fungi - 1252; Plants - 2281; Viruses - 138; Other Eukaryotes - 1362 (source: NCBI BLink).
Protein Annotations
eggNOG:COG5272eggNOG:KOG0011EMBL:AB109195EMBL:AC006341
EMBL:AC010924EMBL:CP002684EnsemblPlants:AT1G16190EnsemblPlants:AT1G16190.1
entrez:838188Gene3D:1.10.10.540GeneID:838188Genevisible:Q84L32
GO:GO:0003684GO:GO:0005634GO:GO:0005737GO:GO:0006289
GO:GO:0031593GO:GO:0043130GO:GO:0043161GO:GO:0070628
hmmpanther:PTHR10621hmmpanther:PTHR10621:SF9HOGENOM:HOG000172162InParanoid:Q84L32
IntAct:Q84L32InterPro:IPR000626InterPro:IPR004806InterPro:IPR006636
InterPro:IPR009060InterPro:IPR015360InterPro:IPR015940InterPro:IPR029071
KEGG:ath:AT1G16190KO:K10839MINT:MINT-7308125OMA:TIHITID
PaxDb:Q84L32Pfam:PF00240Pfam:PF00627Pfam:PF09280
Pfam:Q84L32Pfscan:PS50030Pfscan:PS50053PhylomeDB:Q84L32
PIR:G86296PIR:H86296PRIDE:Q84L32PRINTS:PR01839
PRO:PR:Q84L32PROSITE:PS50030PROSITE:PS50053ProteinModelPortal:Q84L32
Proteomes:UP000006548Reactome:R-ATH-5696394Reactome:R-ATH-5696395RefSeq:NP_173070.1
SMART:SM00165SMART:SM00213SMART:SM00727SMR:Q84L32
STRING:3702.AT1G16190.1SUPFAM:SSF101238SUPFAM:SSF46934SUPFAM:SSF54236
TAIR:AT1G16190tair10-symbols:RAD23ATIGRfam:TIGR00601TIGRFAMs:TIGR00601
UniGene:At.22124UniProt:Q84L32
Coordinates (TAIR10) chr1:+:5543267..5545892
Molecular Weight (calculated) 39844.50 Da
IEP (calculated) 4.12
GRAVY (calculated) -0.44
Length 368 amino acids
Sequence (TAIR10)
(BLAST)
001: MKLTVKTLKG SHFEIRVLPT DTIMAVKKNI EDSQSKDNYP CGQQLLIHNG KVLKDETTLV ENKVTEEGFL VVMLSKSKTA SSAGPSSTQP TSTTTSTISS
101: TTLAAPSTTQ SIAVPASNST PVQEQPTAQS DTYGQAASTL VSGSSIEQMV QQIMEMGGGS WDKETVTRAL RAAYNNPERA VDYLYSGIPE TVTIPATNLS
201: GVGSGRELTA PPPSGGPNSS PLDLFPQEAV SDAAGGDLGT LEFLRGNDQF QQLRSMVNSN PQILQPMLQE LGKQNPQLLR LIQENQAEFL QLLNEPYEGS
301: DGDVDIFDQP DQEMPHSVNV TPEEQESIER LEAMGFDRAI VIEAFLSCDR NEELAANYLL EHSADFED
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)