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AT2G38730.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
cytosol 0.524
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:30961429 (2019): nucleus
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:26572690 (2016): extracellular region plant-type cell wall
  • PMID:22550958 (2012): plastid
  • PMID:21166475 (2011): cytosol
  • PMID:17644812 (2007): plasma membrane
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein; FUNCTIONS IN: peptidyl-prolyl cis-trans isomerase activity; INVOLVED IN: protein folding; LOCATED IN: plasma membrane, vacuole; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Cyclophilin-like (InterPro:IPR015891), Peptidyl-prolyl cis-trans isomerase, cyclophilin-type (InterPro:IPR002130); BEST Arabidopsis thaliana protein match is: Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (TAIR:AT2G21130.1); Has 14613 Blast hits to 14579 proteins in 2550 species: Archae - 106; Bacteria - 5772; Metazoa - 2906; Fungi - 1375; Plants - 1228; Viruses - 4; Other Eukaryotes - 3222 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT2G38730-MONOMERBioGrid:3797EC:5.2.1.8eggNOG:COG0652
eggNOG:KOG0879EMBL:AC005499EMBL:AY568522EMBL:BT002031
EMBL:BT006565EMBL:CP002685EnsemblPlants:AT2G38730EnsemblPlants:AT2G38730.1
entrez:818455Gene3D:2.40.100.10GeneID:818455Genevisible:Q9ZVJ4
GO:GO:0003755GO:GO:0005773GO:GO:0005829GO:GO:0005886
GO:GO:0006457GO:GO:0042277Gramene:AT2G38730.1hmmpanther:PTHR11071
hmmpanther:PTHR11071:SF58HOGENOM:HOG000065981InParanoid:Q9ZVJ4IntAct:Q9ZVJ4
InterPro:IPR002130InterPro:IPR024936InterPro:IPR029000KEGG:ath:AT2G38730
KO:K09567OMA:GRISIYGPANTHER:PTHR11071PaxDb:Q9ZVJ4
Pfam:PF00160Pfam:Q9ZVJ4Pfscan:PS50072PhylomeDB:Q9ZVJ4
PIR:F84808PIRSF:PIRSF001467PRIDE:Q9ZVJ4PRINTS:PR00153
PRO:PR:Q9ZVJ4PROSITE:PS50072ProteinModelPortal:Q9ZVJ4Proteomes:UP000006548
Reactome:R-ATH-72163RefSeq:NP_181407.1SMR:Q9ZVJ4STRING:3702.AT2G38730.1
SUPFAM:SSF50891TAIR:AT2G38730UniGene:At.37253UniProt:Q9ZVJ4
Coordinates (TAIR10) chr2:-:16192579..16194038
Molecular Weight (calculated) 21493.00 Da
IEP (calculated) 8.29
GRAVY (calculated) -0.18
Length 199 amino acids
Sequence (TAIR10)
(BLAST)
001: MNSGGGIVAA AAPSSGGGNV EWHVRPPNPK NPVVFFDVSI GGIPAGRIKM ELFADIAPKT AENFRQFCTG ELRKAGKPLG YKECQFHRVI KDFMVQSGDF
101: LKNDGSGCMS IYGHKFEDEN FTAKHTGPGL LSMANSGPNT NGCQFFITCA KCDWLDNKHV VFGRVLGDGL LVMRKIENVA IGPNNRPKLA VVITECGEM
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)