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AT5G11900.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
cytosol 1.000
ASURE: cytosol
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:30783145 (2019): extracellular region plant-type cell wall
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:22550958 (2012): plastid
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Translation initiation factor SUI1 family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Translation initiation factor SUI1 family protein; FUNCTIONS IN: translation initiation factor activity; INVOLVED IN: translational initiation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Translation initiation factor SUI1 (InterPro:IPR001950), Density-regulated protein DRP1 (InterPro:IPR005873); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
DNASU:831063eggNOG:COG0023eggNOG:KOG3239EMBL:AK175446
EMBL:AK175688EMBL:AK176536EMBL:AK221140EMBL:AY064058
EMBL:BT008585EMBL:CP002688EnsemblPlants:AT5G11900EnsemblPlants:AT5G11900.1
entrez:831063Gene3D:3.30.780.10GeneID:831063GO:GO:0003743
GO:GO:0005840Gramene:AT5G11900.1hmmpanther:PTHR12789HOGENOM:HOG000237611
InterPro:IPR001950InterPro:IPR005873KEGG:ath:AT5G11900OMA:RCKPWLV
Pfam:PF01253Pfscan:PS50296PhylomeDB:Q8VZK2PROSITE:PS50296
Proteomes:UP000006548RefSeq:NP_196751.2SMR:Q8VZK2STRING:3702.AT5G11900.1
SUPFAM:SSF55159TAIR:AT5G11900TIGRfam:TIGR01159TIGRFAMs:TIGR01159
UniGene:At.27058UniProt:Q8VZK2
Coordinates (TAIR10) chr5:+:3834154..3836023
Molecular Weight (calculated) 21592.00 Da
IEP (calculated) 7.80
GRAVY (calculated) -0.38
Length 198 amino acids
Sequence (TAIR10)
(BLAST)
001: MAEKLEPVKV LYCGVCSLPA EYCEFGPDFA RCKPWLVENA PDLYPDLLKE ANEKAADNVS DKLQSVGISS GGADGAPSSA QTGGTSKKEE VKRLPGGKVK
101: KKDRQEVIIE KVVRNKRKCI TIVKGLELFG IKLSDASKKL GKKFATGASV VKGPTEKEQI DVQGDIIYDI VEFITDTWPD VPERSIFFIE DGKKVQAG
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)