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AT5G63440.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
nucleus 0.998
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : Protein of unknown function (DUF167)
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Protein of unknown function (DUF167); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF167 (InterPro:IPR003746); Has 297 Blast hits to 297 proteins in 98 species: Archae - 0; Bacteria - 8; Metazoa - 181; Fungi - 12; Plants - 60; Viruses - 0; Other Eukaryotes - 36 (source: NCBI BLink).
Protein Annotations
BioGrid:21705eggNOG:ENOG41123AIeggNOG:KOG3276eggNOG:KOG4397
EMBL:AB007649EMBL:AF428410EMBL:AK118693EMBL:AY133627
EMBL:CP002688EnsemblPlants:AT5G63440EnsemblPlants:AT5G63440.1EnsemblPlants:AT5G63440.2
EnsemblPlants:AT5G63440.3entrez:836463ExpressionAtlas:Q8GWQ6Gene3D:3.30.1200.10
GeneID:836463Genevisible:Q8GWQ6GO:GO:0005634GO:GO:0005681
GO:GO:0006397GO:GO:0008380GO:GO:0016607HAMAP:MF_00634
hmmpanther:PTHR13420hmmpanther:PTHR13420:SF3HOGENOM:HOG000265504InParanoid:Q8GWQ6
IntAct:Q8GWQ6InterPro:IPR003746KEGG:ath:AT5G63440KO:K09131
MINT:MINT-8414462OMA:TRGEANNPaxDb:Q8GWQ6Pfam:PF02594
PhylomeDB:Q8GWQ6PRIDE:Q8GWQ6PRO:PR:Q8GWQ6ProteinModelPortal:Q8GWQ6
Proteomes:UP000006548RefSeq:NP_001078789.1RefSeq:NP_568972.2RefSeq:NP_851256.1
SMART:SM01152SMR:Q8GWQ6STRING:3702.AT5G63440.2SUPFAM:SSF69786
TAIR:AT5G63440UniGene:At.26254UniProt:Q944I0
Coordinates (TAIR10) chr5:+:25406360..25407786
Molecular Weight (calculated) 22723.20 Da
IEP (calculated) 6.66
GRAVY (calculated) -0.32
Length 205 amino acids
Sequence (TAIR10)
(BLAST)
001: MPKRTTHTYS SEDAAPDGPD SDLFVYYCKH CGSHVLITDT QLQKMPKRKT DRSNVLDKKT HLARLNVSEG GKVLLKRGEG KMERQFRMNC IGCELFVCYR
101: AEENLETASF IYIVDGALSA VAAETNPQDA PVPPCISQLD GGLVQVAIEV EDRAQRSAIT RVNADDVRVT VAAPAARGEA NNELLEFMGR VPNQSVINHF
201: LRFIL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)