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AT1G13060.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
cytosol 0.500
nucleus 0.500
ASURE: cytosol,nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31186290 (2019): cytosol None
  • PMID:30783145 (2019): extracellular region plant-type cell wall
  • PMID:29104584 (2017): nucleus nuclear matrix nucleolus
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:25900983 (2015): Golgi trans-Golgi network
  • PMID:23903016 (2013): plant-type vacuole plant-type vacuole membrane
  • PMID:23673981 (2013): plastid plastid stroma plastoglobules
  • PMID:22550958 (2012): plastid
  • PMID:19334764 (2009): plasma membrane
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : 20S proteasome beta subunit E1
Curator
Summary (TAIR10)
Encodes 20S proteasome beta subunit PBE1 (PBE1).
Computational
Description (TAIR10)
20S proteasome beta subunit E1 (PBE1); FUNCTIONS IN: peptidase activity, endopeptidase activity, threonine-type endopeptidase activity; INVOLVED IN: response to cadmium ion, ubiquitin-dependent protein catabolic process; LOCATED IN: proteasome core complex, proteasome complex; EXPRESSED IN: guard cell, cultured cell, pollen tube, leaf; EXPRESSED DURING: seed development stages; CONTAINS InterPro DOMAIN/s: Proteasome, beta-type subunit, conserved site (InterPro:IPR016050), Peptidase T1A, proteasome beta-subunit (InterPro:IPR000243), Proteasome, subunit alpha/beta (InterPro:IPR001353); BEST Arabidopsis thaliana protein match is: N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein (TAIR:AT3G26340.1); Has 6463 Blast hits to 6458 proteins in 614 species: Archae - 814; Bacteria - 515; Metazoa - 2076; Fungi - 1348; Plants - 839; Viruses - 0; Other Eukaryotes - 871 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT1G13060-MONOMERBioCyc:ARA:GQT-1146-MONOMERBioGrid:23103EC:3.4.25.1
EMBL:AC007357EMBL:AF043536EMBL:AF348579EMBL:AY050871
EMBL:AY150473EMBL:CP002684EMBL:Y13695EnsemblPlants:AT1G13060
EnsemblPlants:AT1G13060.1entrez:837863ExpressionAtlas:O23717Gene3D:3.60.20.10
GeneID:837863GO:GO:0004298GO:GO:0005634GO:GO:0005737
GO:GO:0005839GO:GO:0051603hmmpanther:PTHR11599hmmpanther:PTHR11599:SF63
HOGENOM:HOG000091082InParanoid:O23717InterPro:IPR000243InterPro:IPR001353
InterPro:IPR016050InterPro:IPR023333InterPro:IPR029055MEROPS:T01.A10
Pfam:O23717Pfam:PF00227Pfscan:PS51476PhylomeDB:O23717
PIR:F86264PRIDE:O23717PRINTS:PR00141PRO:PR:O23717
PROSITE:PS00854PROSITE:PS51476ProteinModelPortal:O23717Proteomes:UP000006548
Reactome:R-ATH-1236978Reactome:R-ATH-174184Reactome:R-ATH-349425Reactome:R-ATH-5632684
Reactome:R-ATH-68949Reactome:R-ATH-69017Reactome:R-ATH-983168RefSeq:NP_172765.1
scanprosite:PS00854SMR:O23717SUPFAM:SSF56235TAIR:AT1G13060
tair10-symbols:PBE1UniGene:At.22436UniProt:O23717
Coordinates (TAIR10) chr1:+:4452641..4454663
Molecular Weight (calculated) 29669.20 Da
IEP (calculated) 6.40
GRAVY (calculated) -0.27
Length 274 amino acids
Sequence (TAIR10)
(BLAST)
001: MKLDTSGFET SMPMIGFGSS SDMLDELSSV PSFDLPRTKE FDGFQKKAKD MLKHAKGTTT LAFIFKGGVM VAADSRASMG GYISSQSVKK IIEINPYMLG
101: TMAGGAADCQ FWHRNLGIKC RLHELANKRR ISVSGASKLL ANMLYSYRGM GLSVGTMIAG WDETGPGLYY VDNEGGRLKG DRFSVGSGSP YAYGVLDSGY
201: KYDMSVEEAS ELARRSIYHA TFRDGASGGV ASVYHVGPEG WTKLSGDDVG ELHYHYYPVA PATAEQVMEE ATAE
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)