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AT3G26340.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
cytosol 0.500
nucleus 0.500
ASURE: cytosol,nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:30783145 (2019): extracellular region plant-type cell wall
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:25641898 (2015): plasma membrane
  • PMID:23903016 (2013): plant-type vacuole plant-type vacuole membrane
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein; FUNCTIONS IN: endopeptidase activity, threonine-type endopeptidase activity; INVOLVED IN: proteolysis involved in cellular protein catabolic process, ubiquitin-dependent protein catabolic process; LOCATED IN: proteasome core complex, proteasome complex; EXPRESSED IN: guard cell; CONTAINS InterPro DOMAIN/s: Proteasome, beta-type subunit, conserved site (InterPro:IPR016050), Peptidase T1A, proteasome beta-subunit (InterPro:IPR000243), Proteasome, subunit alpha/beta (InterPro:IPR001353); BEST Arabidopsis thaliana protein match is: 20S proteasome beta subunit E1 (TAIR:AT1G13060.1); Has 6541 Blast hits to 6534 proteins in 612 species: Archae - 835; Bacteria - 512; Metazoa - 2083; Fungi - 1372; Plants - 865; Viruses - 0; Other Eukaryotes - 874 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT3G26340-MONOMERBioGrid:7569EC:3.4.25.1eggNOG:ENOG410XQRP
eggNOG:KOG0175EMBL:AF439846EMBL:AP001298EMBL:AY085678
EMBL:AY125569EMBL:CP002686EnsemblPlants:AT3G26340EnsemblPlants:AT3G26340.1
entrez:822238Gene3D:3.60.20.10GeneID:822238Genevisible:Q9LIP2
GO:GO:0000502GO:GO:0004298GO:GO:0005634GO:GO:0005737
GO:GO:0005839GO:GO:0051603Gramene:AT3G26340.1hmmpanther:PTHR11599
hmmpanther:PTHR11599:SF63HOGENOM:HOG000091082InParanoid:Q9LIP2IntAct:Q9LIP2
InterPro:IPR000243InterPro:IPR001353InterPro:IPR016050InterPro:IPR023333
InterPro:IPR029055KEGG:ath:AT3G26340KO:K02737MEROPS:T01.A10
OMA:TMCAGVTPaxDb:Q9LIP2Pfam:PF00227Pfam:Q9LIP2
Pfscan:PS51476PhylomeDB:Q9LIP2PRIDE:Q9LIP2PRINTS:PR00141
PRO:PR:Q9LIP2PROSITE:PS00854PROSITE:PS51476ProteinModelPortal:Q9LIP2
Proteomes:UP000006548Reactome:R-ATH-1236978Reactome:R-ATH-174184Reactome:R-ATH-349425
Reactome:R-ATH-5632684Reactome:R-ATH-68949Reactome:R-ATH-69017Reactome:R-ATH-983168
RefSeq:NP_189265.1scanprosite:PS00854SMR:Q9LIP2STRING:3702.AT3G26340.1
SUPFAM:SSF56235TAIR:AT3G26340UniGene:At.6729UniProt:Q9LIP2
Coordinates (TAIR10) chr3:-:9650600..9652572
Molecular Weight (calculated) 29487.00 Da
IEP (calculated) 6.16
GRAVY (calculated) -0.20
Length 273 amino acids
Sequence (TAIR10)
(BLAST)
001: MKLDTSGLET TMPVIGFGSN SEMLDGFSSA PSFDLPRTTD FDGFQKKAVE MVKPAKGTTT LAFIFKEGVM VAADSRASMG GYISSQSVKK IIEINPYMLG
101: TMAGGAADCQ FWHRNLGIKC RLHELANKRR ISVSGASKLL ANMLYSYRGM GLSVGTMIAG WDETGPGLYY VDNEGGRLKG DRFSVGSGSP YAYGVLDSGY
201: KFDMSVEEAS ELARRSIYHA TFRDGASGGV ASVYHVGPQG WTKLSGDDVG ELHYHYYPVA PITAEHVMEE AAE
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)