AT3G09250.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plastid 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Nuclear transport factor 2 (NTF2) family protein | ||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Nuclear transport factor 2 (NTF2) family protein; FUNCTIONS IN: DNA binding, nuclease activity; INVOLVED IN: nucleotide-excision repair; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: UvrB/UvrC protein (InterPro:IPR001943); BEST Arabidopsis thaliana protein match is: Nuclear transport factor 2 (NTF2) family protein (TAIR:AT4G10925.3); Has 282 Blast hits to 282 proteins in 97 species: Archae - 0; Bacteria - 155; Metazoa - 0; Fungi - 0; Plants - 84; Viruses - 0; Other Eukaryotes - 43 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:+:2839080..2840294 | ||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 27509.70 Da | ||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.30 | ||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.33 | ||||||||||||||||||||||||||||||||||||
| Length | 244 amino acids | ||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MALHGSGVFC KVSNMVEITS PFGGSMRLLH LPKSYPIHCN MVSASNTFGS AHLKLQNKEP CSRLRPCRVK REENNQTADV ESISMDENTL KQDLETAVQE 101: ENYVEAAKIR DKLKELQEDN KASVLSANSR FYQSFRNGDL AAMQSLWSKS GNPCCVHPGA KGITGYDYVM ESWELVWMNY EFPLLIELKD VEVHVRGEVG 201: YVTCMEFVKT KGSSSWGAQF VSNVFERIDG QWFICIHHAS PVDI |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)