AT2G43180.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plastid 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Phosphoenolpyruvate carboxylase family protein | ||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Phosphoenolpyruvate carboxylase family protein; FUNCTIONS IN: catalytic activity; INVOLVED IN: metabolic process; LOCATED IN: chloroplast; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: LP.04 four leaves visible, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Pyruvate/Phosphoenolpyruvate kinase, catalytic core (InterPro:IPR015813), Isocitrate lyase/phosphorylmutase (InterPro:IPR000918); BEST Arabidopsis thaliana protein match is: Phosphoenolpyruvate carboxylase family protein (TAIR:AT1G77060.1); Has 5459 Blast hits to 5459 proteins in 1102 species: Archae - 78; Bacteria - 2773; Metazoa - 20; Fungi - 198; Plants - 102; Viruses - 0; Other Eukaryotes - 2288 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr2:-:17953719..17955774 | ||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 51989.20 Da | ||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 4.93 | ||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.13 | ||||||||||||||||||||||||||||||||||||
| Length | 479 amino acids | ||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MAALSFCSSS PPRILHKQSK SSFFPSSASS SFTQTVGELF ANPFSVSRRF RGAVNSTVVS DESGNAKLPS SPAKKLRNIM QSPGVLQGPC CFDALSAKLI 101: ERAGFPYCIT SGFSISASRL GLPDKGLISY GEMVDQGQQI TQSVSIPVIG DGGNGYGNAM NVKRTVKGYI KAGFAGIIIN DEVCCENTKS ERRVVSREEA 201: VMRVKAAVDA RRECDSDIVI VAQTDSREAI SLEESLIRAR AFTDAGADVL SVDSLVSREE MKAFCNVYPL VPKLANMLES GGKIPILNPL ELEEIGYKLV 301: AYPISLIGVS IQAMQDALLA IKGGRIPPPG SMASLEEIGE ILGFDTYEEE EKRYATSSSD REVSSSSVYR NQRVAKDDPE QREDLIVEVI TPEVYNEPRN 401: PFSRIWSRSL RIKIIGRDGF EKLDVRIPAG FLEGVTNIVP ALGGVNLKQL MDDAADEVGG KILLDFKDTA GDRIQVFLE |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)