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AT1G67440.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
mitochondrion 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Minichromosome maintenance (MCM2/3/5) family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
embryo defective 1688 (emb1688); FUNCTIONS IN: GTP binding, GTPase activity; INVOLVED IN: embryo development ending in seed dormancy; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Nucleic acid-binding, OB-fold-like (InterPro:IPR016027), EngC GTPase (InterPro:IPR010914), GTPase EngC (InterPro:IPR004881); BEST Arabidopsis thaliana protein match is: Minichromosome maintenance (MCM2/3/5) family protein (TAIR:AT1G67460.1); Has 5395 Blast hits to 5393 proteins in 2047 species: Archae - 18; Bacteria - 4575; Metazoa - 3; Fungi - 0; Plants - 65; Viruses - 0; Other Eukaryotes - 734 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:GQT-1401-MONOMEReggNOG:COG1162eggNOG:ENOG410IF5VEMBL:BT023457
EMBL:CP002684EnsemblPlants:AT1G67440EnsemblPlants:AT1G67440.1entrez:843064
Gene3D:2.40.50.140Gene3D:3.40.50.300GeneID:843064GO:GO:0003924
GO:GO:0005525Gramene:AT1G67440.1HAMAP:MF_01820hmmpanther:PTHR32120
hmmpanther:PTHR32120:SF2HOGENOM:HOG000006958InterPro:IPR004881InterPro:IPR010914
InterPro:IPR012340InterPro:IPR027417InterPro:IPR030378KEGG:ath:AT1G67440
KO:K06949OMA:SPGFNQPPfam:PF03193Pfscan:PS50936
Pfscan:PS51721PhylomeDB:Q4V399PROSITE:PS50936PROSITE:PS51721
Proteomes:UP000006548RefSeq:NP_176911.2SMR:Q4V399STRING:3702.AT1G67440.1
SUPFAM:SSF50249SUPFAM:SSF52540TAIR:AT1G67440tair10-symbols:emb1688
TIGRfam:TIGR00157TIGRFAMs:TIGR00157UniGene:At.35652UniProt:Q4V399
Coordinates (TAIR10) chr1:-:25263905..25265551
Molecular Weight (calculated) 49157.70 Da
IEP (calculated) 6.31
GRAVY (calculated) -0.46
Length 433 amino acids
Sequence (TAIR10)
(BLAST)
001: MLRAKHIGKN YSSSLSPVLS PEHKPSLLES QAIGTVATAQ ANFMRVIVQD VANSVTSDDD NDSSKTGVEL LCVVRAVLKK IRRRVLVGDK VLVGSIDWVD
101: RRGMIENVFH RRSEILDPPV ANVDHLLVLF SLDQPKLEPF TLTRFLVEAE STRIPLTLAL NKTELISEEE LETWKIRLRG WNYEPLFCSV GTKDGLDDIA
201: FVLRDQTSVI VGPSGVGKSS LINVLRSNHG GGVVEDENWF EPMLGNKWFD DQRVGEVSSR SGRGKHTTRN VSLLPVSEGG YLADTPGFNQ PSLLKVTKHS
301: LAHCFPEIRN MIESEKCGFR DCLHIGEPGC VVKGDWERYP YYLQLLDEIR IREEFQLRTF GTKREDDVRY KVGDMGVKHA EPRLMPKKHR RESRKKTKQT
401: MISELDEFED EDSDLYIEND PIVQAIENEN KRQ
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)