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AT5G48730.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plastid 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Pentatricopeptide repeat (PPR) superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Pentatricopeptide repeat (PPR) superfamily protein; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT3G53170.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410Z7Z7eggNOG:KOG4197EMBL:AB012242EMBL:CP002688
EnsemblPlants:AT5G48730EnsemblPlants:AT5G48730.1entrez:834931Gene3D:1.25.40.10
GeneID:834931Genevisible:Q9FKC3GO:GO:0009507Gramene:AT5G48730.1
hmmpanther:PTHR24015hmmpanther:PTHR24015:SF664HOGENOM:HOG000239665InParanoid:Q9FKC3
InterPro:IPR002885InterPro:IPR011990KEGG:ath:AT5G48730OMA:CYEKFQS
PaxDb:Q9FKC3Pfam:PF01535Pfam:PF13041Pfam:PF13812
Pfam:Q9FKC3Pfscan:PS51375PhylomeDB:Q9FKC3PRIDE:Q9FKC3
PRO:PR:Q9FKC3PROSITE:PS51375ProteinModelPortal:Q9FKC3Proteomes:UP000006548
RefSeq:NP_199684.2SMR:Q9FKC3STRING:3702.AT5G48730.1SUPFAM:SSF48452
TAIR:AT5G48730TIGRfam:TIGR00756TIGRFAMs:TIGR00756UniGene:At.49145
UniGene:At.71199UniProt:Q9FKC3
Coordinates (TAIR10) chr5:+:19763152..19765136
Molecular Weight (calculated) 58294.70 Da
IEP (calculated) 9.49
GRAVY (calculated) -0.35
Length 508 amino acids
Sequence (TAIR10)
(BLAST)
001: MVSLSTSTSH APPLPTNRRT AERTFTVRCI SISPREPNYA ITSDKSNNTS LSLRETRQSK WLINAEDVNE RDSKEIKEDK NTKIASRKAI SIILRREATK
101: SIIEKKKGSK KLLPRTVLES LHERITALRW ESAIQVFELL REQLWYKPNV GIYVKLIVML GKCKQPEKAH ELFQEMINEG CVVNHEVYTA LVSAYSRSGR
201: FDAAFTLLER MKSSHNCQPD VHTYSILIKS FLQVFAFDKV QDLLSDMRRQ GIRPNTITYN TLIDAYGKAK MFVEMESTLI QMLGEDDCKP DSWTMNSTLR
301: AFGGNGQIEM MENCYEKFQS SGIEPNIRTF NILLDSYGKS GNYKKMSAVM EYMQKYHYSW TIVTYNVVID AFGRAGDLKQ MEYLFRLMQS ERIFPSCVTL
401: CSLVRAYGRA SKADKIGGVL RFIENSDIRL DLVFFNCLVD AYGRMEKFAE MKGVLELMEK KGFKPDKITY RTMVKAYRIS GMTTHVKELH GVVESVGEAQ
501: VVVKKPDF
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)