AT5G07900.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:mitochondrion 0.993 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Mitochondrial transcription termination factor family protein | ||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Mitochondrial transcription termination factor family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: membrane; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Mitochodrial transcription termination factor-related (InterPro:IPR003690); BEST Arabidopsis thaliana protein match is: Mitochondrial transcription termination factor family protein (TAIR:AT1G21150.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:+:2520188..2521405 | ||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 45848.30 Da | ||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 9.49 | ||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.01 | ||||||||||||||||||||||||||||||||||||
| Length | 405 amino acids | ||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MAVAIPQATS LTNLVFLTKL IPRGSFTTIL PKHHRKPIFV FSLQTQFSSP VTTLTSKNPK DDEQQQKLSF TLNYLIDSCG LSPDSATVAS RKLLLDSPER 101: PNTVLNLLRD HGFTTAQISS LVKKRPVLLL ANAESVLLPK LSFFLSIGVS KSLLARTLAS DPTILTRSLV NQLIPSYNFL KSVLDSDEKI VAALRRTTWV 201: FLEDHTKNLV PNINYMAETG VPEKCIKLLL THFPEAVMQK NHEFQAIAKQ AQEMGFNPQK STFVLAIHAL SGKGNKSIWD KCFEVYQRWG WSEDDIMCAF 301: KKHPHCMMLS ERKINRTMEY FVNEMNMAPR SIAQCPVVLF FSLEKRIIPR CSVTKVLVSN GLVKEDWSLT SLLVPVEKVF LEKLVIKYEE ELPELMNLYL 401: GCTKL |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)