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AT3G06980.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plastid 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31932409 (2020): plastid
  • PMID:31818904 (2020): mitochondrion
  • PMID:31615849 (2019): plastid plastid thylakoid
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:27137770 (2016): plastid plastid stroma
  • PMID:25900983 (2015): Golgi
  • PMID:25900983 (2015): Golgi Golgi apparatus Golgi membrane
  • PMID:25900983 (2015): Golgi trans-Golgi network
  • PMID:25900983 (2015): Golgi trans-Golgi network early endosome
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:25900983 (2015): plant-type vacuole plant-type vacuole membrane
  • PMID:24124904 (2013): plastid
  • PMID:23549413 (2013): plastid plastid stroma
  • PMID:20423899 (2010): plastid
  • PMID:18431481 (2008): plastid
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : DEA(D/H)-box RNA helicase family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
DEA(D/H)-box RNA helicase family protein; FUNCTIONS IN: helicase activity, ATP binding, nucleic acid binding, ATP-dependent helicase activity; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RNA helicase, DEAD-box type, Q motif (InterPro:IPR014014), DNA/RNA helicase, DEAD/DEAH box type, N-terminal (InterPro:IPR011545), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021); BEST Arabidopsis thaliana protein match is: RH39 (TAIR:AT4G09730.1); Has 36871 Blast hits to 36254 proteins in 2997 species: Archae - 517; Bacteria - 17572; Metazoa - 5953; Fungi - 4324; Plants - 2343; Viruses - 14; Other Eukaryotes - 6148 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:GQT-765-MONOMERBioGrid:5218EC:3.6.4.13eggNOG:COG0513
eggNOG:KOG0331EMBL:AC016827EMBL:AJ296275EMBL:AY048260
EMBL:AY113064EMBL:BT002520EMBL:CP002686EnsemblPlants:AT3G06980
EnsemblPlants:AT3G06980.1entrez:819883Gene3D:3.40.50.300GeneID:819883
Genevisible:Q8GUG7GO:GO:0003723GO:GO:0003724GO:GO:0004004
GO:GO:0005524GO:GO:0006968GO:GO:0009507Gramene:AT3G06980.1
hmmpanther:PTHR24031hmmpanther:PTHR24031:SF181HOGENOM:HOG000078675InParanoid:Q8GUG7
IntAct:Q8GUG7InterPro:IPR001650InterPro:IPR011545InterPro:IPR014001
InterPro:IPR014014InterPro:IPR027417KEGG:ath:AT3G06980KO:K13179
OMA:GREDRRFPaxDb:Q8GUG7Pfam:PF00270Pfam:PF00271
Pfam:Q8GUG7Pfscan:PS51192Pfscan:PS51194Pfscan:PS51195
PhylomeDB:Q8GUG7PRIDE:Q8GUG7PRO:PR:Q8GUG7PROSITE:PS51192
PROSITE:PS51194PROSITE:PS51195ProteinModelPortal:Q8GUG7Proteomes:UP000006548
RefSeq:NP_187354.1SMART:SM00487SMART:SM00490SMR:Q8GUG7
STRING:3702.AT3G06980.1SUPFAM:SSF52540TAIR:AT3G06980UniGene:At.18753
UniProt:Q8GUG7
Coordinates (TAIR10) chr3:+:2201531..2204662
Molecular Weight (calculated) 87433.40 Da
IEP (calculated) 7.71
GRAVY (calculated) -0.69
Length 781 amino acids
Sequence (TAIR10)
(BLAST)
001: MLARAPPPYF NFPARNNTIC NRNEIVRLFR NGGGVVARGA GFTRRPLETS SSYDDSTDDG FVIISAADKE NEFAPPPSSD LLSSIPSESA RRNGSRSRGL
101: TASFGRLKAQ KVKALVGKVT QKKQHMSHNE EEDEDDASDE NYSADEGFGS SSILDLMRKK LAMKAIPRSG KSAERNEVKR ASKVRESRES RRDLDRLEGD
201: DEDVDEVSNP DRFTDNQRAG SRSSYSKGGY AANSRGKGDR LSVARDLDSF EGHGRAIDEV SNPRKFNDNE RAESRSSYSR DSSANSRGRE DRRFVAKELD
301: TFQGRDKAYD EVYNPRRFTD NERGLRGGSH SKGSDTNSRG WGDRRSVVYT RDMDDWRERN KTKDTRETGF FSRKTFAEIG CSEDMMKALK EQNFDRPAHI
401: QAMAFSPVID GKSCIIADQS GSGKTLAYLV PVIQRLREEE LQGHSKSSPG CPRVIVLVPT AELASQVLAN CRSISKSGVP FRSMVVTGGF RQRTQLENLE
501: QGVDVLIATP GRFTYLMNEG ILGLSNLRCA ILDEVDILFG DDEFEAALQN LINSSPVTAQ YLFVTATLPL EIYNKLVEVF PDCEVVMGPR VHRVSNALEE
601: FLVDCSGDDN AEKTPETAFQ NKKTALLQIM EENPVSKTII FCNKIETCRK VENIFKRVDR KERQLHVLPF HAALSQESRL TNMQEFTSSQ PEENSLFLVC
701: TDRASRGIDF SGVDHVVLFD FPRDPSEYVR RVGRTARGAR GKGKAFIFVV GKQVGLARRI IERNEKGHPV HDVPNAYEFT T
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)