AT5G19960.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : RNA-binding (RRM/RBD/RNP motifs) family protein | ||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
RNA-binding (RRM/RBD/RNP motifs) family protein; FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, glycine rich protein (InterPro:IPR015465), RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: cold, circadian rhythm, and RNA binding 1 (TAIR:AT4G39260.3); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:+:6744029..6746133 | ||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 38680.80 Da | ||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.69 | ||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -1.16 | ||||||||||||||||||||||||||||||||||||
| Length | 337 amino acids | ||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MTMDDGNSVY VGGLPYDITE EAVRRVFSIY GSVLTVKIVN DRSVRGKCYG FVTFSNRRSA DDAIEDMDGK SIGGRAVRVN DVTTRGGRMN PGPGRLQPHG 101: GWDRSPDRRS DGNYERDRYS DRSRERDRSQ DRRKDHRYIE KERAYEHSHD FERRNDHDMV DRNGYKERVF DGDEGDWRGD RSYVDNGRGI NGTSAHEGRS 201: QETKREDSTI LDGGRGRDHF SNSSGDHQVK EDLEALIKMR EALRDEVMVM EERLEVKEVV CSELQKKSKR LEDLLINEKK LVSQRRKELA KLHKSYSRVR 301: ECTDNLKDCE QELQLLVNSA AREGVAGADE GLGHGYP |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)