AT5G65683.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Zinc finger (C3HC4-type RING finger) family protein | ||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Zinc finger (C3HC4-type RING finger) family protein; FUNCTIONS IN: ubiquitin-protein ligase activity, zinc ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), von Willebrand factor, type A (InterPro:IPR002035); BEST Arabidopsis thaliana protein match is: Zinc finger (C3HC4-type RING finger) family protein (TAIR:AT4G37890.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:+:26261472..26263704 | ||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 78583.40 Da | ||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 10.19 | ||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.41 | ||||||||||||||||||||||||||||||||||||||||
| Length | 717 amino acids | ||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MVFGWRKAFC TSVSSNQDKP QQHSSLHTTD PPIPTPRFRS KFGFLSNPST PRLRSRGGSG TGCRSSASTS VTIPSLPTSP KLHCRTTSNA TPRTSNSSSP 101: KFFSNPSSPK SSSSSSSQGG GGVSLLRATL LLNKSNSSRC AICLQRVNSN QSNSTAAIFT AECSHSFHLS CVNGLEDKRC PFCSAAWNHA PKSNYPAVNN 201: NFGSDPIRRP EIREIKTGKS LRVYNDDEPL AYSPVSLAQI NTIHESDEND DVEDDDDFPG FFRDSSITSD MVPSISGNLE VKLLPESAVV ETGKKKETHV 301: VIMKLKASPS PSSITDAIKA RRPSIDLVTV LDLSNGGANL QTVKHAMRSV ISLLREMDRL SIVVFSTGSK RLMPLRRMTA KGRRSARRMV DALGGMETTG 401: GVGMSVNDAL KKAVKVVEDR REKNPSTSIF VLSDGQDQPE AVLKAKLNAT RIPFVVSTTR FSRPEIPVHS VYIASPGALL HAPLRDAFTE RIASLLNVTL 501: HNVKLNLSLV NGSHLTEISS VYSLTGRLEN FGSGSVIQVG DLFAEEEREF LVELKVPTSS SGSHQVMSVQ SSIVDQMTHQ PMTCPKEKRF LIPRPQSVRY 601: VSSSIERLRN LHSMCRAVAD SRRLIEREDL SGAYQVLTTA RSNASHSDDS LRSLEVELNE LSRIKPRNSI LNRTEDKPEQ LTPTSAWRAA EKLAKVAIMR 701: KHLNRVSDMH GLENARF |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)