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AT4G01480.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
cytosol 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:26572690 (2016): extracellular region plant-type cell wall
  • PMID:21988472 (2012): plant-type vacuole plant-type vacuole membrane
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : pyrophosphorylase 5
Curator
Summary (TAIR10)
Encodes a protein that might have inorganic pyrophosphatase activity.
Computational
Description (TAIR10)
pyrophosphorylase 5 (PPa5); FUNCTIONS IN: inorganic diphosphatase activity, pyrophosphatase activity; INVOLVED IN: phosphate metabolic process, metabolic process; LOCATED IN: membrane, cytoplasm; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Inorganic pyrophosphatase (InterPro:IPR008162); BEST Arabidopsis thaliana protein match is: pyrophosphorylase 1 (TAIR:AT1G01050.1); Has 5969 Blast hits to 5969 proteins in 1836 species: Archae - 171; Bacteria - 4299; Metazoa - 244; Fungi - 260; Plants - 269; Viruses - 0; Other Eukaryotes - 726 (source: NCBI BLink).
Protein Annotations
EC:3.6.1.1eggNOG:COG0221eggNOG:KOG1626EMBL:AF096370
EMBL:AL161492EMBL:AY054516EMBL:AY081667EMBL:CP002687
EnsemblPlants:AT4G01480EnsemblPlants:AT4G01480.1entrez:827962Gene3D:3.90.80.10
GeneID:827962Genevisible:O82597GO:GO:0000287GO:GO:0004427
GO:GO:0005737GO:GO:0006796Gramene:AT4G01480.1gramene_pathway:3.6.1.1
gramene_pathway:PWYQT-4437HAMAP:MF_00209hmmpanther:PTHR10286hmmpanther:PTHR10286:SF10
HOGENOM:HOG000236472IntAct:O82597InterPro:IPR008162iPTMnet:O82597
KEGG:00190+3.6.1.1KEGG:ath:AT4G01480KO:K01507OMA:YKHITNI
PANTHER:PTHR10286PaxDb:O82597Pfam:O82597Pfam:PF00719
PhylomeDB:O82597PIR:T01946PRIDE:O82597PRO:PR:O82597
PROSITE:PS00387ProteinModelPortal:O82597Proteomes:UP000006548RefSeq:NP_192057.1
scanprosite:PS00387SMR:O82597STRING:3702.AT4G01480.1SUPFAM:SSF50324
TAIR:AT4G01480tair10-symbols:AtPPa5tair10-symbols:PPa5UniGene:At.24865
UniProt:O82597
Coordinates (TAIR10) chr4:+:626539..627758
Molecular Weight (calculated) 24710.90 Da
IEP (calculated) 6.52
GRAVY (calculated) -0.38
Length 216 amino acids
Sequence (TAIR10)
(BLAST)
001: MNGEEVKTSQ PQKKLQNPTP RLNERILSSL SKRSVAAHPW HDLEIGPGAP VIFNVVIEIS KGSKVKYELD KKTGLIKVDR ILYSSVVYPH NYGFVPRTLC
101: EDNDPIDVLV IMQEPVLPGC FLRARAIGLM PMIDQGEKDD KIIAVCVDDP EYKHITNINE LPPHRLSEIR RFFEDYKKNE NKEVAVNDFL QPGPAIEAIQ
201: YSMDLYAEYI LHTLRR
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)