AT2G32840.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : proline-rich family protein | ||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
proline-rich family protein; LOCATED IN: chloroplast; BEST Arabidopsis thaliana protein match is: hydroxyproline-rich glycoprotein family protein (TAIR:AT1G04930.1); Has 812 Blast hits to 721 proteins in 178 species: Archae - 4; Bacteria - 123; Metazoa - 186; Fungi - 136; Plants - 186; Viruses - 37; Other Eukaryotes - 140 (source: NCBI BLink). | ||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr2:-:13933101..13934836 | ||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 37385.30 Da | ||||||||||||||||||||||||||||
| IEP (calculated) | 10.31 | ||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.82 | ||||||||||||||||||||||||||||
| Length | 337 amino acids | ||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MSTPDPNPNP NPNPSVSVAV STPIVTASES PVTQPNTVIT PSSQPQPQTP ASSYRAIAPL HRHHPHQNIY TNPLPIRRSN SVTNSPHQPP HPDPSSLIYP 101: FGSSGRGFPT RPVRQNSNSV ADPVGSPSPG GYTPRGPVYG YHHGQFVSNL DPMNQFMRAA HPQNQQSPQL GSGHMKGVPH FLQPRATPSP TSILDNSGHK 201: KARSRDDALV LVRKRKVRIT EGASLYSLCR SWLRNGAHEG IKPQRIDMMT CLPKPLPVDK TETSLPKDLV EEAICEEDKE DEESVKHLSE SDLLKRHIDR 301: AKKVRARLRE ERLKRIARYK ARLALLLPPF GEQCRNE |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)