AT3G10730.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:endoplasmic reticulum 0.500 nucleus 0.500 ASURE: endoplasmic reticulum,nucleus What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : SAD1/UNC-84 domain protein 2 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
Encodes a member of the Sad1/UNC-84 (SUN)-domain proteins: AtSUN1(At5g04990), AtSUN2(AT3G10730). SUN domain proteins are part of the cytoskeletal-nucleoskeletal bridging complexes. AtSUN1 and AtSUN2 are localized to the nuclear envelope and are present as homomers and heteromers in vivo. | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
SAD1/UNC-84 domain protein 2 (SUN2); FUNCTIONS IN: protein binding; INVOLVED IN: biological_process unknown; LOCATED IN: nuclear envelope, endoplasmic reticulum, phragmoplast, spindle; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Sad1/UNC-like, C-terminal (InterPro:IPR012919); BEST Arabidopsis thaliana protein match is: SAD1/UNC-84 domain protein 1 (TAIR:AT5G04990.1); Has 537 Blast hits to 534 proteins in 132 species: Archae - 4; Bacteria - 39; Metazoa - 349; Fungi - 35; Plants - 67; Viruses - 0; Other Eukaryotes - 43 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:-:3358556..3360522 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 49943.20 Da | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 9.67 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.42 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 455 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MSASTVSITA SPRTIRRTPV LSGEKKSNFD FPPSESHANA AIGESSAGTN KDLIRAEAAG ERSNTYDVGP VTRKSGSTAT GTNTTTTQRR TRKSQGNKID 101: RGKWKTVVRV FAKQFGALLL LVGLIQLIRK LTLKDSSLSS SNFPIETEMV LSELESRISA VDGLVKTTTK MMQVQVEFLD KKMDSESRAL RQTIDSTSSV 201: LHSELKKVES KTERLQVSVD ELNAKPLVSR EELERVYEEL KKGKVGDSDV NIDKLRAYAR DIVEKEIGKH VADGLGRVDY ALASGGAFVM GHSDPFLVGN 301: GRNWFGTSRR RVHSKAVKML TPSFGEPGQC FPLKGSNGYV LVRLRAPIIP EAVTLEHVSK AVAYDRSSAP KDCRVSGWLG DIDMETETMP LLTEFSYDLD 401: RSNAQTFDIA DSAHSGLVNT VRLDFNSNHG SSSHTCIYRF RVHGRELDSV SVAHA |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)