AT5G04990.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:endoplasmic reticulum 0.500 nucleus 0.500 ASURE: endoplasmic reticulum,nucleus What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : SAD1/UNC-84 domain protein 1 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
Encodes a member of the Sad1/UNC-84 (SUN)-domain proteins: AtSUN1(At5g04990), AtSUN2(AT3G10730). SUN domain proteins are part of the cytoskeletal-nucleoskeletal bridging complexes. AtSUN1 and AtSUN2 are localized to the nuclear envelope and are present as homomers and heteromers in vivo. | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
SAD1/UNC-84 domain protein 1 (SUN1); FUNCTIONS IN: protein binding; INVOLVED IN: biological_process unknown; LOCATED IN: nuclear envelope, endoplasmic reticulum; EXPRESSED IN: inflorescence, cultured cell, callus, leaf; CONTAINS InterPro DOMAIN/s: Sad1/UNC-like, C-terminal (InterPro:IPR012919); BEST Arabidopsis thaliana protein match is: SAD1/UNC-84 domain protein 2 (TAIR:AT3G10730.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:-:1471698..1473770 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 51504.60 Da | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.43 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.49 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 471 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MSASTVSITA NTAAATRRTP ILAGEKKSNF DYPQSESLAN GGVGEAGGTS RDLSRGEATL DRSQGQDLGP VTRRSVSAAT GTNTTATQRR TRKVATPKSE 101: KARWKTVVRI FAKQLGALLI IVGLIQLTRK MILKASSPSS PISSYETEMA FSGLESRIAE VDGLVKATTN SMQVQVELLD KKMEREAKVL RQEIERKASA 201: FQSELKKIES RTESLEKSVD EVNAKPWVTK DELERIYEEL KKGNVDDSAF SEISIDELRA YARDIMEKEI EKHAADGLGR VDYALASGGA FVMEHSDPYL 301: VGKGSSWFAT TMRRAHTNAV KMLSPSFGEP GQCFPLKGSE GYVQIRLRGP IIPEAFTLEH VAKSVAYDRS SAPKDCRVSG SLQGPESSAE TENMQLLTEF 401: TYDLDRSNAQ TFNILESSSS GLIDTVRLDF TSNHGSDSHT CIYRFRVHGR APDPVPVVGT NLDQDSSPES E |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)