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AT5G43750.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plastid 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : NAD(P)H dehydrogenase 18
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
NAD(P)H dehydrogenase 18 (NDH18); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to oxidative stress; LOCATED IN: chloroplast thylakoid membrane, chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IWK8eggNOG:ENOG41127XZEMBL:AB026651EMBL:AY085676
EMBL:BT004156EMBL:BT005490EMBL:CP002688EnsemblPlants:AT5G43750
EnsemblPlants:AT5G43750.1entrez:834396GeneID:834396Genevisible:Q9FG89
GO:GO:0006810GO:GO:0006979GO:GO:0009507GO:GO:0009535
GO:GO:0016021GO:GO:0031969Gramene:AT5G43750.1hmmpanther:PTHR36399
hmmpanther:PTHR36399:SF1HOGENOM:HOG000005715IntAct:Q9FG89KEGG:ath:AT5G43750
OMA:QIYNMERPaxDb:Q9FG89Pfam:Q9FG89PhylomeDB:Q9FG89
PRIDE:Q9FG89PRO:PR:Q9FG89Proteomes:UP000006548RefSeq:NP_568629.1
STRING:3702.AT5G43750.1TAIR:AT5G43750tair10-symbols:NDH18TCDB:3.D.1.8.1
TMHMM:TMhelixUniGene:At.30103UniProt:Q9FG89
Coordinates (TAIR10) chr5:-:17580100..17581145
Molecular Weight (calculated) 23747.10 Da
IEP (calculated) 4.33
GRAVY (calculated) -0.19
Length 212 amino acids
Sequence (TAIR10)
(BLAST)
001: MATVTILSPK SIPKVTDSKF GARVSDQIVN VVKCGKSGRR LKLAKLVSAA GLSQIEPDIN EDPIGQFETN SIEMEDFKYG YYDGAHTYYE GEVQKGTFWG
101: AIADDIAAVD QTNGFQGLIS CMFLPAIALG MYFDAPGEYL FIGAALFTVV FCIIEMDKPD QPHNFEPQIY KLERGARDKL INDYNTMSIW DFNDKYGDVW
201: DFTIEKDDIA TR
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)