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AT3G10060.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plastid 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31975158 (2020): plastid
  • PMID:31932409 (2020): plastid
  • PMID:31615849 (2019): plastid plastid thylakoid
  • PMID:30962257 (2019): plastid
  • PMID:30783145 (2019): extracellular region plant-type cell wall
  • PMID:30135097 (2018): plastid
  • PMID:29967049 (2018): plastid
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:27137770 (2016): plastid plastid stroma
  • PMID:24872594 (2014): plastid plastid thylakoid
  • PMID:24361574 (2014): plastid plastid stroma
  • PMID:24124904 (2013): plastid
  • PMID:23673981 (2013): plastid plastid stroma plastoglobules
  • PMID:21531424 (2011): plastid
  • PMID:20423899 (2010): plastid
  • PMID:20061580 (2010): plastid plastid thylakoid
  • PMID:18431481 (2008): plastid plastid thylakoid
  • PMID:15028209 (2004): plastid
  • PMID:14729914 (2004): plastid
  • PMID:11826309 (2002): plastid
FP Images

Arabidopsis cell culture (plastidal marker)

At3g10060-GFP
(full-length)		plastidal marker-RFPoverlay

Images by Sandra Tanz
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : FKBP-like peptidyl-prolyl cis-trans isomerase family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)		 FKBP-like peptidyl-prolyl cis-trans isomerase family protein; FUNCTIONS IN: FK506 binding, peptidyl-prolyl cis-trans isomerase activity; INVOLVED IN: protein folding; LOCATED IN: thylakoid, chloroplast thylakoid membrane, chloroplast thylakoid lumen, chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Peptidyl-prolyl cis-trans isomerase, FKBP-type (InterPro:IPR001179); BEST Arabidopsis thaliana protein match is: FKBP-like peptidyl-prolyl cis-trans isomerase family protein (TAIR:AT1G20810.1); Has 8406 Blast hits to 7908 proteins in 1571 species: Archae - 44; Bacteria - 4267; Metazoa - 1616; Fungi - 433; Plants - 872; Viruses - 0; Other Eukaryotes - 1174 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT3G10060-MONOMEREC:5.2.1.8eggNOG:COG0545eggNOG:KOG0552
EMBL:AC010927EMBL:AY094442EMBL:AY122895EMBL:CP002686
EnsemblPlants:AT3G10060EnsemblPlants:AT3G10060.1entrez:820167GeneID:820167
Genevisible:Q9SR70GO:GO:0003755GO:GO:0006457GO:GO:0009507
GO:GO:0009534GO:GO:0009535GO:GO:0009543GO:GO:0009579
Gramene:AT3G10060.1hmmpanther:PTHR10516hmmpanther:PTHR10516:SF323HOGENOM:HOG000154887
InParanoid:Q9SR70InterPro:IPR001179InterPro:IPR023566KEGG:ath:AT3G10060
OMA:PYRCSLPPANTHER:PTHR10516PaxDb:Q9SR70Pfam:PF00254
Pfam:Q9SR70Pfscan:PS50059PhylomeDB:Q9SR70PRIDE:Q9SR70
PRO:PR:Q9SR70PROSITE:PS50059ProteinModelPortal:Q9SR70Proteomes:UP000006548
RefSeq:NP_187617.1SMR:Q9SR70STRING:3702.AT3G10060.1SUPFAM:SSF54534
TAIR:AT3G10060UniGene:At.23399UniGene:At.39997UniProt:Q9SR70
Coordinates (TAIR10) chr3:+:3102291..3103801
Molecular Weight (calculated) 24506.00 Da
IEP (calculated) 10.17
GRAVY (calculated) -0.08
Length 230 amino acids
Sequence (TAIR10)
(BLAST) 		001: MILTMKLVHP LHHSLSSSIP FPSRKRQSKP YRCSLPSPGC EKVIRTETVL PPAPVSCEGR RVLLGCLLAT ASGILSTGSA EAVSTSRRAL RASKLPESDF
101: TTLPNGLKYY DIKVGNGAEA VKGSRVAVHY VAKWKGITFM TSRQGLGVGG GTPYGFDVGQ SERGNVLKGL DLGVEGMRVG GQRLVIVPPE LAYGKKGVQE
201: IPPNATIELD IELLSIKQSP FGTPVKIVEG
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)