AT1G51110.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plastid 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Plastid-lipid associated protein PAP / fibrillin family protein | ||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Plastid-lipid associated protein PAP / fibrillin family protein; FUNCTIONS IN: structural molecule activity; INVOLVED IN: tryptophan biosynthetic process; LOCATED IN: chloroplast thylakoid membrane, chloroplast, membrane; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Plastid lipid-associated protein/fibrillin (InterPro:IPR006843); BEST Arabidopsis thaliana protein match is: Plastid-lipid associated protein PAP / fibrillin family protein (TAIR:AT3G26070.1); Has 329 Blast hits to 327 proteins in 75 species: Archae - 0; Bacteria - 65; Metazoa - 0; Fungi - 0; Plants - 242; Viruses - 0; Other Eukaryotes - 22 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:+:18935380..18937484 | ||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 45767.90 Da | ||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 8.08 | ||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.18 | ||||||||||||||||||||||||||||||||||||||||
| Length | 409 amino acids | ||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MVAVRFYAVE MSLPCLCPCP SSPISLSLCS PRFNLLNTTS RRLGLSRNCR TLRISCSSSS TVTDQTQQSS FNDAELKLID ALIGIQGRGK SASPKQLNDV 101: ESAVKVLEGL EGIQNPTDSD LIEGRWRLMF TTRPGTASPI QRTFTGVDVF TVFQDVYLKA TNDPRVSNIV KFSDFIGELK VEAVASIKDG KRVLFRFDRA 201: AFDLKFLPFK VPYPVPFRLL GDEAKGWLDT TYLSPSGNLR ISRGNKGTTF VLQKETVPRQ KLLATISQDK GVAEAIDEFL ASNSNSAEDN YELLEGSWQM 301: IWSSQMYTDS WIENAANGLM GRQIIEKDGR IKFEVNIIPA FRFSMKGKFI KSESSTYDLK MDDAAIIGGA FGYPVDITNN IELKILYTDE KMRISRGFDN 401: IIFVHIREI |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)