AT2G34860.1
Subcellular Consensus
(Prediction and Experimental) min: :max .
SUBAcon:plastid 1.000 What is SUBAcon? |
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Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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Description (TAIR10) | protein_coding : DnaJ/Hsp40 cysteine-rich domain superfamily protein | ||||||||||||||||||||||||||||||||||||||||
Curator Summary (TAIR10) |
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Computational Description (TAIR10) |
embryo sac development arrest 3 (EDA3); FUNCTIONS IN: unfolded protein binding, heat shock protein binding; INVOLVED IN: megagametogenesis; LOCATED IN: chloroplast thylakoid membrane, chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Heat shock protein DnaJ, cysteine-rich domain (InterPro:IPR001305); Has 773 Blast hits to 773 proteins in 260 species: Archae - 32; Bacteria - 427; Metazoa - 13; Fungi - 2; Plants - 175; Viruses - 0; Other Eukaryotes - 124 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||
Protein Annotations |
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Coordinates (TAIR10) | chr2:+:14708380..14709804 | ||||||||||||||||||||||||||||||||||||||||
Molecular Weight (calculated) | 19943.70 Da | ||||||||||||||||||||||||||||||||||||||||
IEP (calculated) | 9.25 | ||||||||||||||||||||||||||||||||||||||||
GRAVY (calculated) | -0.44 | ||||||||||||||||||||||||||||||||||||||||
Length | 186 amino acids | ||||||||||||||||||||||||||||||||||||||||
Sequence (TAIR10) (BLAST) |
001: MAASSSHLFA LPSPASPFLS APNRNRVRVL AKSCPENQSF DSNDSDSSSE TTHKAQGDQK SVSRRQWMTA CVCASAALIS NSYTFVSVQS AAALDKKPGG 101: SCRNCQGSGA VLCDMCGGTG KWKALNRKRA KDVYEFTECP NCYGRGKLVC PVCLGTGLPN NKGLLRRPGA RELLEKMYNG RLLPDS |
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See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)