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AT1G76450.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plastid 1.000
ASURE: plastid
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Photosystem II reaction center PsbP family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Photosystem II reaction center PsbP family protein; FUNCTIONS IN: calcium ion binding; INVOLVED IN: photosynthesis; LOCATED IN: thylakoid, thylakoid lumen, chloroplast thylakoid membrane, chloroplast thylakoid lumen, chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Photosystem II oxygen evolving complex protein PsbP (InterPro:IPR002683), Mog1/PsbP/DUF1795, alpha/beta/alpha sandwich (InterPro:IPR016124); Has 57 Blast hits to 57 proteins in 26 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 51; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink).
Protein Annotations
BioCyc:MetaCyc:AT1G76450-MONOMEReggNOG:ENOG410IK6ReggNOG:ENOG41124H1EMBL:AC012394
EMBL:AC015450EMBL:AK227301EMBL:AY084993EMBL:BT009723
EMBL:CP002684EnsemblPlants:AT1G76450EnsemblPlants:AT1G76450.1entrez:843978
Gene3D:3.40.1000.10GeneID:843978Genevisible:Q9S720GO:GO:0005509
GO:GO:0009507GO:GO:0009535GO:GO:0009543GO:GO:0009579
GO:GO:0009654GO:GO:0015979GO:GO:0019898GO:GO:0031977
Gramene:AT1G76450.1hmmpanther:PTHR31407hmmpanther:PTHR31407:SF17HOGENOM:HOG000029524
InParanoid:Q9S720InterPro:IPR002683InterPro:IPR016123KEGG:ath:AT1G76450
OMA:TNGWYNRPaxDb:Q9S720Pfam:PF01789Pfam:Q9S720
PhylomeDB:Q9S720PRIDE:Q9S720PRO:PR:Q9S720ProteinModelPortal:Q9S720
Proteomes:UP000006548RefSeq:NP_565131.1STRING:3702.AT1G76450.1SUPFAM:SSF55724
TAIR:AT1G76450UniGene:At.43912UniGene:At.70089UniProt:Q9S720
Coordinates (TAIR10) chr1:+:28684618..28686109
Molecular Weight (calculated) 27491.20 Da
IEP (calculated) 6.80
GRAVY (calculated) -0.34
Length 247 amino acids
Sequence (TAIR10)
(BLAST)
001: MAAISPWLSS PQSFSNPRVT ITDSRRCSSI SAAISVLDSS NEEQHRISSR DHVGMKRRDV MLQIASSVFF LPLAISPAFA ETNASEAFRV YTDETNKFEI
101: SIPQDWQVGQ AEPNGFKSIT AFYPQETSTS NVSIAITGLG PDFTRMESFG KVEAFAETLV SGLDRSWQKP VGVTAKLIDS RASKGFYYIE YTLQNPGEAR
201: KHLYSAIGMA TNGWYNRLYT VTGQFTDEES AEQSSKIQKT VKSFRFI
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)